Browse Element(s) Details


Os.49986.1.S1_at

Description gb:AK119491.1
DB_XREF= gi:37989114
TID=Os.49986.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49986 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-134-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-134-D04, full insert sequence.
FL= gb:AK119491.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0164011/11Rf1 protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01590Os.23131.1.S1_at11/118+345740..347482expressed protein
LOC_Os08g01590OsAffx.29825.1.S1_x_at2/118+345740..347482expressed protein
LOC_Os08g01600OsAffx.28980.1.S1_at11/118+350768..354209glycoside hydrolase family 28 protein, putative
LOC_Os08g01610Os.18706.1.S1_x_at10/118+354808..360214GDP-mannose transporter, putative, expressed
LOC_Os08g01610Os.33584.1.S1_x_at7/118+354808..360214GDP-mannose transporter, putative, expressed
LOC_Os08g01610Os.18706.1.S1_at6/118+354808..360214GDP-mannose transporter, putative, expressed
LOC_Os08g01610Os.33584.1.S1_at3/118+354808..360214GDP-mannose transporter, putative, expressed
LOC_Os08g01620Os.7321.1.S1_at11/118+361414..364631Shwachman-Bodian-Diamond syndrome protein homolog, putative, expressed
LOC_Os08g01630Os.49890.1.S1_at11/118+365110..367507DNA repair metallo-beta-lactamase family protein, expressed
LOC_Os08g01640Os.49986.1.S1_at11/118+367770..370405Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os08g01640Os.52705.1.S1_at3/118+367770..370405Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os08g01650Os.53118.1.S1_at9/118+374960..377639Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os08g01660Os.7391.1.S1_x_at11/118+377753..381899Mago nashi protein homolog, putative, expressed
LOC_Os08g01660Os.7391.1.S1_at11/118+377753..381899Mago nashi protein homolog, putative, expressed
LOC_Os08g01670Os.5834.1.S1_at11/118+383315..384849pectinesterase inhibitor domain containing protein, expressed
LOC_Os08g01680Os.23940.1.A1_at11/118+388883..393753Chromatin assembly factor 1 subunit B, putative, expressed
LOC_Os08g01690Os.51744.1.A1_at11/118+393788..395077transposon protein, putative, CACTA, En/Spm sub-class, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49986.1.S1_at--654--3371Chr08:369585..369609 (25 bp)
CACCATGATGGTGGCTGATGATACC
LOC_Os08g01640
Os.49986.1.S1_at--440--3911Chr08:369488..369512 (25 bp)
CTGGACACAGCTTATCACCTATTTG
LOC_Os08g01640
Os.49986.1.S1_at--990--7911Chr08:369445..369469 (25 bp)
GGTTGTCGCCTGATGTTGTGACTTA
LOC_Os08g01640
Os.49986.1.S1_at--653--2951Chr08:369377..369401 (25 bp)
AAGGCCGCTGTGGTCCTTGTTAGGA
LOC_Os08g01640
Os.49986.1.S1_at--974--811Chr08:369343..369367 (25 bp)
ATGGTGCTATGCCTAATCGCATCAC
LOC_Os08g01640
Os.49986.1.S1_at--322--531Chr08:369328..369352 (25 bp)
ATCGCATCACGCACAATAGTCTTTT
LOC_Os08g01640
Os.49986.1.S1_at--978--391Chr08:369288..369312 (25 bp)
ATCAGGAAAGCCCAATGACGCTATT
LOC_Os08g01640
Os.49986.1.S1_at--679--7411Chr08:369235..369259 (25 bp)
GTGTTGAACCAGATGTATTCACTTA
LOC_Os08g01640
Os.49986.1.S1_at--105--9831Chr08:369210..369234 (25 bp)
TAACACGTTGATGGGCTATCTCTGC
LOC_Os08g01640
Os.49986.1.S1_at--463--2651Chr08:369125..369149 (25 bp)
AAGCCTAACAGTGCTACCTACGGTA
LOC_Os08g01640
Os.49986.1.S1_at--275--7971Chr08:369074..369098 (25 bp)
GGATCTCTTGTTAAGATGCATCATC
LOC_Os08g01640
Target Sequence 
CACCATGATGGTGGCTGATGATACCAGAGGAGGATACCCACCCGACGTGGTTTCATACAACACAGTCATCAACGGCTTGC
TTAGAGAGGGTCGTCAGCTGGACACAGCTTATCACCTATTTGATCAAATGCTGGATCAGGGGTTGTCGCCTGATGTTGTG
ACTTACAACTCGATTATCTCTGCCCTTTCCAAGGCTCGAGCAATGGACAAGGCCGCTGTGGTCCTTGTTAGGATGGTTAA
GAATGGTGCTATGCCTAATCGCATCACGCACAATAGTCTTTTGCATGGATATTGCTCATCAGGAAAGCCCAATGACGCTA
TTGGGGTTTTCAAAAGGATGTGCAGGGATGGTGTTGAACCAGATGTATTCACTTATAACACGTTGATGGGCTATCTCTGC
AAGAATGGAAGATCCATGGAAGCTAGAAAGATCTTTGACTCTATGGTCAAGAGGGGCCACAAGCCTAACAGTGCTACCTA
CGGTACTCTGCTTCATGGGTATGCTACTGAAGGATCTCTTGTTAAGATGCATCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49986.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis