Browse Element(s) Details


OsAffx.28980.1.S1_at

Description tigr:9636.m00059
TID=OsAffx.28980.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BT004354 putative polygalacturonase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0160011/11glycoside hydrolase family 28 protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01560OsAffx.28979.1.S1_at11/118+325748..326029hypothetical protein
LOC_Os08g01570OsAffx.27394.1.S1_at4/118+328895..331475transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g01580OsAffx.16778.1.S1_at11/118+335868..340386NB-ARC domain containing protein
LOC_Os08g01590Os.23131.1.S1_at11/118+345740..347482expressed protein
LOC_Os08g01590OsAffx.29825.1.S1_x_at2/118+345740..347482expressed protein
LOC_Os08g01600OsAffx.28980.1.S1_at11/118+350768..354209glycoside hydrolase family 28 protein, putative
LOC_Os08g01610Os.18706.1.S1_x_at10/118+354808..360214GDP-mannose transporter, putative, expressed
LOC_Os08g01610Os.33584.1.S1_x_at7/118+354808..360214GDP-mannose transporter, putative, expressed
LOC_Os08g01610Os.18706.1.S1_at6/118+354808..360214GDP-mannose transporter, putative, expressed
LOC_Os08g01610Os.33584.1.S1_at3/118+354808..360214GDP-mannose transporter, putative, expressed
LOC_Os08g01620Os.7321.1.S1_at11/118+361414..364631Shwachman-Bodian-Diamond syndrome protein homolog, putative, expressed
LOC_Os08g01630Os.49890.1.S1_at11/118+365110..367507DNA repair metallo-beta-lactamase family protein, expressed
LOC_Os08g01640Os.49986.1.S1_at11/118+367770..370405Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os08g01640Os.52705.1.S1_at3/118+367770..370405Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os08g01650Os.53118.1.S1_at9/118+374960..377639Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os08g01660Os.7391.1.S1_x_at11/118+377753..381899Mago nashi protein homolog, putative, expressed
LOC_Os08g01660Os.7391.1.S1_at11/118+377753..381899Mago nashi protein homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004650molecular_functionpolygalacturonase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28980.1.S1_at--716--8051Chr08:353619..353643 (25 bp)
GGAGATGATCTGGTTGCTGTCAAGA
LOC_Os08g01600
OsAffx.28980.1.S1_at--242--3891Chr08:353648..353672 (25 bp)
CTGGGATCAGTACGGCATCTCGGTA
LOC_Os08g01600
OsAffx.28980.1.S1_at--600--6131Chr08:353702..353726 (25 bp)
GAGGGTTTCAGGCACAACTCCAACA
LOC_Os08g01600
OsAffx.28980.1.S1_at--330--2291Chr08:353771..353795 (25 bp)
AAATGTCATCATTCGCGACCTGCAC
LOC_Os08g01600
OsAffx.28980.1.S1_at--165--5831Chr08:353787..353811 (25 bp)
GACCTGCACGTATGGAATTCCGCGC
LOC_Os08g01600
OsAffx.28980.1.S1_at--947--2891Chr08:353895..353919 (25 bp)
AAGGTGCCTATAAGATTCAGCCGAG
LOC_Os08g01600
OsAffx.28980.1.S1_at--174--4511Chr08:353914..353938 (25 bp)
GCCGAGGTGCGGATGATCATTCAGA
LOC_Os08g01600
OsAffx.28980.1.S1_at--260--1191Chr08:353944..353968 (25 bp)
AGTATGACCGAAGTGCGCTGCCAAA
LOC_Os08g01600
OsAffx.28980.1.S1_at--572--8691Chr08:353978..354002 (25 bp)
TGTGCGCATCAGAGACGTTGTCGGT
LOC_Os08g01600
OsAffx.28980.1.S1_at--533--7471Chr08:354001..354025 (25 bp)
GTGTGGATTTACAGCGCGCACCGAT
LOC_Os08g01600
OsAffx.28980.1.S1_at--12--6211Chr08:354132..354156 (25 bp)
GAGGCACATGATGTTCTTCCAGCGC
LOC_Os08g01600
Target Sequence 
GGAGATGATCTGGTTGCTGTCAAGAGTGGCTGGGATCAGTACGGCATCTCGGTAGGGAAACCAAGCTCAAACATCATCAT
CCAGAGGGTTTCAGGCACAACTCCAACATGCTCAGGTGTGGGATTTGGGAGCGAGATGTCCGGTGGAATATCAAATGTCA
TCATTCGCGACCTGCACGTATGGAATTCCGCGCAAGCGGTGAGGATAAAAACCGATGTAGGACGAGGTGGCTACATAACC
AACATCACCATAGAGAATGTCAGGATGGAGAAGGTCAAGGTGCCTATAAGATTCAGCCGAGGTGCGGATGATCATTCAGA
TGACAAGTATGACCGAAGTGCGCTGCCAAAGATCAGTGATGTGCGCATCAGAGACGTTGTCGGTGTGGATTTACAGCGCG
CACCGATGCTGGAGGCAGTGCACGGTGCGGTGTATGAAGGGATTTGCTTCAGAAACGTTAGCTTGACAGTGATAAAGCGT
CAGGATAGATGGCATTGCGAGTCTGTGTATGGAGAGGCACATGATGTTCTTCCAGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28980.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis