Browse Element(s) Details


OsAffx.28979.1.S1_at

Description tigr:9636.m00055
TID=OsAffx.28979.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0156011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01500NANA8+300821..301111hypothetical protein
LOC_Os08g01510NANA8+301981..303580Cytochrome P450 71C4, putative, expressed
LOC_Os08g01520NANA8+312618..314665Cytochrome P450 71C4, putative
LOC_Os08g01530NANA8+315870..316544expressed protein
LOC_Os08g01540OsAffx.30349.3.S1_x_at11/118+319647..320126hypothetical protein
LOC_Os08g01550OsAffx.16777.1.S1_at11/118+322679..323347hypothetical protein
LOC_Os08g01550OsAffx.16777.1.S1_x_at11/118+322679..323347hypothetical protein
LOC_Os08g01560OsAffx.28979.1.S1_at11/118+325748..326029hypothetical protein
LOC_Os08g01570OsAffx.27394.1.S1_at4/118+328895..331475transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g01580OsAffx.16778.1.S1_at11/118+335868..340386NB-ARC domain containing protein
LOC_Os08g01590Os.23131.1.S1_at11/118+345740..347482expressed protein
LOC_Os08g01590OsAffx.29825.1.S1_x_at2/118+345740..347482expressed protein
LOC_Os08g01600OsAffx.28980.1.S1_at11/118+350768..354209glycoside hydrolase family 28 protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28979.1.S1_at--475--3731Chr08:325757..325781 (25 bp)
CTACTCGCCAAGTTAGCCACACTGA
LOC_Os08g01560
OsAffx.28979.1.S1_at--786--1691Chr08:325771..325795 (25 bp)
AGCCACACTGATGGGAGATGAGTAC
LOC_Os08g01560
OsAffx.28979.1.S1_at--43--6051Chr08:325820..325844 (25 bp)
GAGATAGTTTTTCTCAACAGTGAGC
LOC_Os08g01560
OsAffx.28979.1.S1_at--3--10591Chr08:325830..325854 (25 bp)
TTCTCAACAGTGAGCTGAGCACCAT
LOC_Os08g01560
OsAffx.28979.1.S1_at--458--8911Chr08:325845..325869 (25 bp)
TGAGCACCATGAATGCGCTACTTGA
LOC_Os08g01560
OsAffx.28979.1.S1_at--16--3031Chr08:325856..325880 (25 bp)
AATGCGCTACTTGAGGAGCTAGCCG
LOC_Os08g01560
OsAffx.28979.1.S1_at--345--2071Chr08:325864..325888 (25 bp)
ACTTGAGGAGCTAGCCGATAGGGAT
LOC_Os08g01560
OsAffx.28979.1.S1_at--1127--2631Chr08:325900..325924 (25 bp)
AACCATATCAGGGAGATGGTCTCCG
LOC_Os08g01560
OsAffx.28979.1.S1_at--748--6311Chr08:325942..325966 (25 bp)
GATGACTTCATGCACCGCGCAGTAT
LOC_Os08g01560
OsAffx.28979.1.S1_at--886--9031Chr08:325952..325976 (25 bp)
TGCACCGCGCAGTATCAGATCATAA
LOC_Os08g01560
OsAffx.28979.1.S1_at--927--6891Chr08:325963..325987 (25 bp)
GTATCAGATCATAAAGGAGCCAAGC
LOC_Os08g01560
Target Sequence 
CTACTCGCCAAGTTAGCCACACTGATGGGAGATGAGTACAAGAAGCTCAAAGGCGTGAGAAAGGAGATAGTTTTTCTCAA
CAGTGAGCTGAGCACCATGAATGCGCTACTTGAGGAGCTAGCCGATAGGGATGAGATTGGAGGAACCATATCAGGGAGAT
GGTCTCCGATATTGAGGACTGCATCGATGACTTCATGCACCGCGCAGTATCAGATCATAAAGGAGCCAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28979.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis