Browse Element(s) Details


OsAffx.16777.1.S1_x_at

Description tigr:9636.m00054
TID=OsAffx.16777.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0155011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01490Os.15815.1.S1_at11/118+295361..297693Cytochrome P450 71C4, putative, expressed
LOC_Os08g01490Os.15815.2.S1_x_at11/118+295361..297693Cytochrome P450 71C4, putative, expressed
LOC_Os08g01500NANA8+300821..301111hypothetical protein
LOC_Os08g01510NANA8+301981..303580Cytochrome P450 71C4, putative, expressed
LOC_Os08g01520NANA8+312618..314665Cytochrome P450 71C4, putative
LOC_Os08g01530NANA8+315870..316544expressed protein
LOC_Os08g01540OsAffx.30349.3.S1_x_at11/118+319647..320126hypothetical protein
LOC_Os08g01550OsAffx.16777.1.S1_at11/118+322679..323347hypothetical protein
LOC_Os08g01550OsAffx.16777.1.S1_x_at11/118+322679..323347hypothetical protein
LOC_Os08g01560OsAffx.28979.1.S1_at11/118+325748..326029hypothetical protein
LOC_Os08g01570OsAffx.27394.1.S1_at4/118+328895..331475transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g01580OsAffx.16778.1.S1_at11/118+335868..340386NB-ARC domain containing protein
LOC_Os08g01590Os.23131.1.S1_at11/118+345740..347482expressed protein
LOC_Os08g01590OsAffx.29825.1.S1_x_at2/118+345740..347482expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16777.1.S1_x_at--31--3811Chr08:322873..322897 (25 bp)
CTCGCCGTGGCGAAACGCGCGTGTC
LOC_Os08g01550
OsAffx.16777.1.S1_x_at--1115--2371Chr08:322885..322909 (25 bp)
AAACGCGCGTGTCGTGCTCCGTCGT
LOC_Os08g01550
OsAffx.16777.1.S1_x_at--386--9951Chr08:322964..322988 (25 bp)
TACGCGGCCGGCTTCTGCGACGGCG
LOC_Os08g01550
OsAffx.16777.1.S1_x_at--1112--831Chr08:323030..323054 (25 bp)
ATGGACAGTCTCTGGGAGGACCTCA
LOC_Os08g01550
OsAffx.16777.1.S1_x_at--413--8531Chr08:323031..323055 (25 bp)
TGGACAGTCTCTGGGAGGACCTCAA
LOC_Os08g01550
OsAffx.16777.1.S1_x_at--38--5651Chr08:323033..323057 (25 bp)
GACAGTCTCTGGGAGGACCTCAACG
LOC_Os08g01550
OsAffx.16777.1.S1_x_at--1069--2111Chr08:323034..323058 (25 bp)
ACAGTCTCTGGGAGGACCTCAACGA
LOC_Os08g01550
OsAffx.16777.1.S1_x_at--57--2751Chr08:323075..323099 (25 bp)
AAGAAGGGCGGCGACATGTTCCTCG
LOC_Os08g01550
OsAffx.16777.1.S1_x_at--279--1471Chr08:323076..323100 (25 bp)
AGAAGGGCGGCGACATGTTCCTCGC
LOC_Os08g01550
OsAffx.16777.1.S1_x_at--82--8871Chr08:323238..323262 (25 bp)
TGATGCGGTCGCTGAAGAGGATGCT
LOC_Os08g01550
OsAffx.16777.1.S1_x_at--542--5951Chr08:323281..323305 (25 bp)
GAGCAAGGTGCACAAGTCCGACGAC
LOC_Os08g01550
Target Sequence 
CTCGCCGTGGCGAAACGCGCGTGTCGTGCTCCGTCGTCGCCACGCCACCGGCGGCGGCGGCGGCGGCGCATGCTCTCCCG
CCCTCAGCGACTACGCGGCCGGCTTCTGCGACGGCGCGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGAGGATG
GACAGTCTCTGGGAGGACCTCAACGACGACGACGCAGCCGGGAAGAAGGGCGGCGACATGTTCCTCGCCTCCCTCGACGT
GTCGCGCCGCCGCTCCGTGGGTGGCGCGGGCCTCGCCGAGAAGCGCGAGGGCGGCGGAGGCGCGGCGGTGTTGGGGTTGG
GGGCGTCGAGGAGCTCGCGGCGGCGGGCGCCGGGGCTGGTGGCGATGATGCGGTCGCTGAAGAGGATGCTGGTGGCGCAC
AAGGGGAAGAGCAAGGTGCACAAGTCCGACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16777.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis