Browse Element(s) Details


OsAffx.16778.1.S1_at

Description tigr:9636.m00057
TID=OsAffx.16778.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0158011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01520NANA8+312618..314665Cytochrome P450 71C4, putative
LOC_Os08g01530NANA8+315870..316544expressed protein
LOC_Os08g01540OsAffx.30349.3.S1_x_at11/118+319647..320126hypothetical protein
LOC_Os08g01550OsAffx.16777.1.S1_at11/118+322679..323347hypothetical protein
LOC_Os08g01550OsAffx.16777.1.S1_x_at11/118+322679..323347hypothetical protein
LOC_Os08g01560OsAffx.28979.1.S1_at11/118+325748..326029hypothetical protein
LOC_Os08g01570OsAffx.27394.1.S1_at4/118+328895..331475transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g01580OsAffx.16778.1.S1_at11/118+335868..340386NB-ARC domain containing protein
LOC_Os08g01590Os.23131.1.S1_at11/118+345740..347482expressed protein
LOC_Os08g01590OsAffx.29825.1.S1_x_at2/118+345740..347482expressed protein
LOC_Os08g01600OsAffx.28980.1.S1_at11/118+350768..354209glycoside hydrolase family 28 protein, putative
LOC_Os08g01610Os.18706.1.S1_x_at10/118+354808..360214GDP-mannose transporter, putative, expressed
LOC_Os08g01610Os.33584.1.S1_x_at7/118+354808..360214GDP-mannose transporter, putative, expressed
LOC_Os08g01610Os.18706.1.S1_at6/118+354808..360214GDP-mannose transporter, putative, expressed
LOC_Os08g01610Os.33584.1.S1_at3/118+354808..360214GDP-mannose transporter, putative, expressed
LOC_Os08g01620Os.7321.1.S1_at11/118+361414..364631Shwachman-Bodian-Diamond syndrome protein homolog, putative, expressed
LOC_Os08g01630Os.49890.1.S1_at11/118+365110..367507DNA repair metallo-beta-lactamase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16778.1.S1_at--145--6291Chr08:339817..339841 (25 bp)
GATGTTGACCTGCTGGGCTCATTAC
LOC_Os08g01580
OsAffx.16778.1.S1_at--798--3091Chr08:339870..339894 (25 bp)
AATACTACACGGTTGGTGCTTCTCC
LOC_Os08g01580
OsAffx.16778.1.S1_at--956--7311Chr08:339885..339909 (25 bp)
GTGCTTCTCCAAAGTACCTCGATGG
LOC_Os08g01580
OsAffx.16778.1.S1_at--564--6231Chr08:339905..339929 (25 bp)
GATGGATCAACGGTACTCTCCGTAA
LOC_Os08g01580
OsAffx.16778.1.S1_at--270--8251Chr08:340060..340084 (25 bp)
GGCACTAGAGCATCATTATTCCCTG
LOC_Os08g01580
OsAffx.16778.1.S1_at--1098--9491Chr08:340086..340110 (25 bp)
TCTCCTGAAACTCAAGCTGCGTGTG
LOC_Os08g01580
OsAffx.16778.1.S1_at--523--7491Chr08:340108..340132 (25 bp)
GTGGGTGAACACGTTGCCTCAAGGC
LOC_Os08g01580
OsAffx.16778.1.S1_at--612--2351Chr08:340166..340190 (25 bp)
AAAGCCTCCATCTGTGGTTCCGGAA
LOC_Os08g01580
OsAffx.16778.1.S1_at--84--7591Chr08:340200..340224 (25 bp)
GGGCATTCACGTAACACCGGAGGGT
LOC_Os08g01580
OsAffx.16778.1.S1_at--100--8931Chr08:340238..340262 (25 bp)
TGAGCCTCCAAAGCATCTGCGTGGA
LOC_Os08g01580
OsAffx.16778.1.S1_at--543--2731Chr08:340289..340313 (25 bp)
AAGCAACTTATCCATGGGACGCCAT
LOC_Os08g01580
Target Sequence 
GATGTTGACCTGCTGGGCTCATTACCCATTTTTCCTCAAAGTATCGAGAGACTAATACTACACGGTTGGTGCTTCTCCAA
AGTACCTCGATGGATCAACGGTACTCTCCGTAACCTCCAACATGTGTTGCTGGAGGTATCGGAGACATCGAGTAGCGAGG
TTGACCTTCTTGGTGAACTACCCTCCCTCGCCGACCTCGAGCTGAGAGTAGGACTCAAGACAAGAGATGTCATCGCGTTC
GGTGGCACTAGAGCATCATTATTCCCTGCTCTCCTGAAACTCAAGCTGCGTGTGGGTGAACACGTTGCCTCAAGGCTGCA
GTTCCAGGCAGGGGTGATGCCCAAGCTCCAAAGCCTCCATCTGTGGTTCCGGAATTGTGAGTCGGGCATTCACGTAACAC
CGGAGGGTATGCAGCACCTCCTGAGCCTCCAAAGCATCTGCGTGGAGATATACCTCCGGGATGAGGAGCTGAAAGCAACT
TATCCATGGGACGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16778.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis