Browse Element(s) Details


Os.49890.1.S1_at

Description gb:AK119294.1
DB_XREF= gi:37988917
TID=Os.49890.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49890 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-130-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-130-E03, full insert sequence.
FL= gb:AK119294.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0163011/11DNA repair metallo-beta-lactamase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01580OsAffx.16778.1.S1_at11/118+335868..340386NB-ARC domain containing protein
LOC_Os08g01590Os.23131.1.S1_at11/118+345740..347482expressed protein
LOC_Os08g01590OsAffx.29825.1.S1_x_at2/118+345740..347482expressed protein
LOC_Os08g01600OsAffx.28980.1.S1_at11/118+350768..354209glycoside hydrolase family 28 protein, putative
LOC_Os08g01610Os.18706.1.S1_x_at10/118+354808..360214GDP-mannose transporter, putative, expressed
LOC_Os08g01610Os.33584.1.S1_x_at7/118+354808..360214GDP-mannose transporter, putative, expressed
LOC_Os08g01610Os.18706.1.S1_at6/118+354808..360214GDP-mannose transporter, putative, expressed
LOC_Os08g01610Os.33584.1.S1_at3/118+354808..360214GDP-mannose transporter, putative, expressed
LOC_Os08g01620Os.7321.1.S1_at11/118+361414..364631Shwachman-Bodian-Diamond syndrome protein homolog, putative, expressed
LOC_Os08g01630Os.49890.1.S1_at11/118+365110..367507DNA repair metallo-beta-lactamase family protein, expressed
LOC_Os08g01640Os.49986.1.S1_at11/118+367770..370405Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os08g01640Os.52705.1.S1_at3/118+367770..370405Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os08g01650Os.53118.1.S1_at9/118+374960..377639Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os08g01660Os.7391.1.S1_x_at11/118+377753..381899Mago nashi protein homolog, putative, expressed
LOC_Os08g01660Os.7391.1.S1_at11/118+377753..381899Mago nashi protein homolog, putative, expressed
LOC_Os08g01670Os.5834.1.S1_at11/118+383315..384849pectinesterase inhibitor domain containing protein, expressed
LOC_Os08g01680Os.23940.1.A1_at11/118+388883..393753Chromatin assembly factor 1 subunit B, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
GO:0006281biological_processDNA repair
GO:0006310biological_processDNA recombination
GO:0003910molecular_functionDNA ligase (ATP) activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49890.1.S1_at--317--5391Chr08:367048..367072 (25 bp)
GAAGCACTTGATCAGGTTTTGGCCA
LOC_Os08g01630
Os.49890.1.S1_at--819--3471Chr08:367060..367084 (25 bp)
CAGGTTTTGGCCATCGATCGTCTAG
LOC_Os08g01630
Os.49890.1.S1_at--1116--6391Chr08:367075..367099 (25 bp)
GATCGTCTAGCCTACTTGCATGACA
LOC_Os08g01630
Os.49890.1.S1_at--1068--7671Chr08:367122..367146 (25 bp)
GGGTATTGCTCCATCAGAAACTGAT
LOC_Os08g01630
Os.49890.1.S1_at--833--8171Chr08:367174..367198 (25 bp)
GGAAGCAGTGACTCCTCGAATGCTA
LOC_Os08g01630
Os.49890.1.S1_at--1076--7011Chr08:367239..367263 (25 bp)
GTACAGGTCGATGAACGTGCCGGTT
LOC_Os08g01630
Os.49890.1.S1_at--749--8911Chr08:367287..367311 (25 bp)
TGAGCTCATGGCAGCCTCAAAGCGA
LOC_Os08g01630
Os.49890.1.S1_at--777--2591Chr08:367306..367330 (25 bp)
AAGCGACCAAGGGTTTCTCCTGCTG
LOC_Os08g01630
Os.49890.1.S1_at--383--4731Chr08:367327..367351 (25 bp)
GCTGTGCAGCTGTAGGCCTATCATA
LOC_Os08g01630
Os.49890.1.S1_at--929--1251Chr08:367351..367375 (25 bp)
AGATTCATCTGTTGTTTCCGGCCTC
LOC_Os08g01630
Os.49890.1.S1_at--305--3931Chr08:367369..367393 (25 bp)
CGGCCTCTACTTTCAGTCATTATTT
LOC_Os08g01630
Target Sequence 
GAAGCACTTGATCAGGTTTTGGCCATCGATCGTCTAGCCTACTTGCATGACAACAACCAAGAGGTAACAAAAGAGGGTAT
TGCTCCATCAGAAACTGATCAGGAGAACTCTAAAGTTCCTGACAAGGGAAGCAGTGACTCCTCGAATGCTATTGGATCAT
CAAAAGGTCTGAATGCCAACCTGAGAAAGCTGTACAGGTCGATGAACGTGCCGGTTCCTCGTCCCCTGCCCTCATTAGTT
GAGCTCATGGCAGCCTCAAAGCGACCAAGGGTTTCTCCTGCTGTGCAGCTGTAGGCCTATCATAGATTCATCTGTTGTTT
CCGGCCTCTACTTTCAGTCATTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49890.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis