Browse Element(s) Details


OsAffx.5717.1.S1_at

Description tigr:9636.m00483
TID=OsAffx.5717.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0554011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05520Os.49830.1.S1_at11/118+2942209..2945028Myb-like DNA-binding domain containing protein, expressed
LOC_Os08g05530Os.25436.1.S1_at11/118+2958908..2961444small nuclear ribonucleoprotein E, putative, expressed
LOC_Os08g05530OsAffx.16839.1.S1_s_at9/118+2958908..2961444small nuclear ribonucleoprotein E, putative, expressed
LOC_Os08g05540OsAffx.5717.1.S1_at11/118+2962018..2962695expressed protein
LOC_Os08g05550Os.36897.1.A1_at11/118+2962962..2965420hypothetical protein
LOC_Os08g05560Os.53532.1.S1_at11/118+2966257..2970070Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g05570Os.10774.1.S1_at10/118+2971047..2975917Monodehydroascorbate reductase, chloroplast precursor, putative, expressed
LOC_Os08g05580OsAffx.16840.1.S1_at11/118+2977397..2980418Major intrinsic protein, expressed
LOC_Os08g05580OsAffx.17990.1.S1_at1/118+2977397..2980418Major intrinsic protein, expressed
LOC_Os08g05590OsAffx.29048.1.S1_at11/118+2981082..2984672aquaporin NIP5.1, putative, expressed
LOC_Os08g05590Os.52150.1.S1_at2/118+2981082..2984672aquaporin NIP5.1, putative, expressed
LOC_Os08g05590Os.52150.1.S1_x_at1/118+2981082..2984672aquaporin NIP5.1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5717.1.S1_at--187--3491Chr08:2962590..2962614 (25 bp)
CAGGACGCGGTGATGCTCAAGCTGC
LOC_Os08g05540
OsAffx.5717.1.S1_at--542--951Chr08:2962589..2962613 (25 bp)
AGGACGCGGTGATGCTCAAGCTGCA
LOC_Os08g05540
OsAffx.5717.1.S1_at--674--4832Chr08:2962576..2962600 (25 bp)
GCTCAAGCTGCAGGCGAACTCCCAC
LOC_Os08g05540
OsAffx.5717.1.S1_at--297--7951Chr08:2962414..2962438 (25 bp)
GGATCCGAAGCCGAAGCAACCCGAT
LOC_Os08g05540
OsAffx.5717.1.S1_at--374--551Chr08:2962412..2962436 (25 bp)
ATCCGAAGCCGAAGCAACCCGATGC
LOC_Os08g05540
OsAffx.5717.1.S1_at--1023--8551Chr08:2962352..2962376 (25 bp)
TGGAGGCGCGTTTCGCAGCGCTGAA
LOC_Os08g05540
OsAffx.5717.1.S1_at--842--1391Chr08:2962304..2962328 (25 bp)
AGACGAGGGTGAGGCTGGAGGATCT
LOC_Os08g05540
OsAffx.5717.1.S1_at--931--3211Chr08:2962240..2962264 (25 bp)
CAAGGTGATGCGGTGGGCGATGGAC
LOC_Os08g05540
OsAffx.5717.1.S1_at--32--4491Chr08:2962185..2962209 (25 bp)
GCCGGCAAGGCGAAATCCACCAAGA
LOC_Os08g05540
OsAffx.5717.1.S1_at--62--4271Chr08:2962184..2962208 (25 bp)
CCGGCAAGGCGAAATCCACCAAGAA
LOC_Os08g05540
OsAffx.5717.1.S1_at--1126--5931Chr08:2962123..2962147 (25 bp)
GAGCAGCAGCGTCAGTAGCGAGGAC
LOC_Os08g05540
Target Sequence 
CAGGACGCGGTGATGCTCAAGCTGCAGGCGAACTCCCACCTCGTCTCCTCGTCGTCCTCGGCCACCGCTCCGAATCTTCC
TCCCTCGCTCGACCACCCCGCCGCCGCCGCCGCCGCAGATCCCCTCGACGCCGACCTCGCCCGCCGCTTCGACGCGCTCA
GGTCTCACCGCCCGCCGGATCCGAAGCCGAAGCAACCCGATGCTCCCTCCGCCGCAGCCGCCGGCGGGATGGACGAGCTG
GAGGCGCGTTTCGCAGCGCTGAAGGGGGCGGCGGGGCCGGAGAAGGAGACGAGGGTGAGGCTGGAGGATCTGGGCGGGGA
GTCGGACGAGGACGAGGACGACGAGGTGGACAAGGTGATGCGGTGGGCGATGGACGCCGCGCGGCTCGACGTCGCCACGG
CCGGCGCCGGCAAGGCGAAATCCACCAAGAAGGATGACGACGAGGAGGAGGAAGAGAAGGATCAGACGAGCAGCAGCGTC
AGTAGCGAGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5717.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis