Browse Element(s) Details


OsAffx.5729.1.S1_at

Description tigr:9636.m00642
TID=OsAffx.5729.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0707011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07010OsAffx.16865.1.S1_at11/118+3922402..3927219ABC-2 type transporter family protein, expressed
LOC_Os08g07010OsAffx.16865.1.S1_x_at11/118+3922402..3927219ABC-2 type transporter family protein, expressed
LOC_Os08g07020OsAffx.29071.1.S1_at11/118+3930047..3930877hypothetical protein
LOC_Os08g07030OsAffx.16866.1.S1_at11/118+3933836..3934069hypothetical protein
LOC_Os08g07040OsAffx.16867.1.S1_at11/118+3934777..3938452expressed protein
LOC_Os08g07050NANA8+3939587..3940141hypothetical protein
LOC_Os08g07060Os.51132.1.S1_at11/118+3942695..3944788expressed protein
LOC_Os08g07070OsAffx.5729.1.S1_at11/118+3945013..3945976expressed protein
LOC_Os08g07080Os.26820.1.A1_s_at11/118+3954152..3959294Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os08g07080Os.26820.1.A1_at11/118+3954152..3959294Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os08g07090OsAffx.5731.1.S1_at10/118+3960134..3963366hypothetical protein
LOC_Os08g07090OsAffx.22759.2.S1_at1/118+3960134..3963366hypothetical protein
LOC_Os08g07100Os.26849.1.S1_at9/118+3965901..3970988Terpene synthase, N-terminal domain containing protein, expressed
LOC_Os08g07100Os.26820.1.A1_s_at2/118+3965901..3970988Terpene synthase, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5729.1.S1_at--730--7671Chr08:3945665..3945689 (25 bp)
GGGTTGCATGCAGCTCTGAACAATG
LOC_Os08g07070
OsAffx.5729.1.S1_at--389--1171Chr08:3945513..3945537 (25 bp)
AGTCAACTGCTAACCGTCCGATCGA
LOC_Os08g07070
OsAffx.5729.1.S1_at--935--2571Chr08:3945472..3945496 (25 bp)
AACGACAGGCGTGGCCCAGGTAGAA
LOC_Os08g07070
OsAffx.5729.1.S1_at--949--5351Chr08:3945431..3945455 (25 bp)
GAAGATGAGCAATCCCCATGACATG
LOC_Os08g07070
OsAffx.5729.1.S1_at--72--4291Chr08:3945339..3945363 (25 bp)
CCTGCGGTCCATGCTAGATTGCAAG
LOC_Os08g07070
OsAffx.5729.1.S1_at--369--6811Chr08:3945279..3945303 (25 bp)
GTTTTCTCTGAAGATGCTACCTCCA
LOC_Os08g07070
OsAffx.5729.1.S1_at--919--4851Chr08:3945264..3945288 (25 bp)
GCTACCTCCATCAATCTTCAGAAAG
LOC_Os08g07070
OsAffx.5729.1.S1_at--596--671Chr08:3945239..3945263 (25 bp)
ATGAACTGGACCATGTGAGCTCTGT
LOC_Os08g07070
OsAffx.5729.1.S1_at--1002--7531Chr08:3945216..3945240 (25 bp)
GTGGCTCACTAGTTTTTCAGCACAT
LOC_Os08g07070
OsAffx.5729.1.S1_at--5--1191Chr08:3945097..3945121 (25 bp)
AGTACTGTTCTAGGATTGTCATTCA
LOC_Os08g07070
OsAffx.5729.1.S1_at--289--9971Chr08:3945064..3945088 (25 bp)
TACCGGACGGCTACATGTCATTCGA
LOC_Os08g07070
Target Sequence 
GGGTTGCATGCAGCTCTGAACAATGAGGGGATGCTGAACTCCAAATGGCAGTCAACTGCTAACCGTCCGATCGACACGCG
TCGCGCATCCAACGACAGGCGTGGCCCAGGTAGAAGTAGAACGAGGCCACCGAAGATGAGCAATCCCCATGACATGGATC
CAAGGTTCAGTGAGGACTACTCCGGGCCCGGTGGTCATTCACCGAATCACCACCGAACAACTCCCTGCGGTCCATGCTAG
ATTGCAAGTAGCAGATAGATCATAGATGATGAAAACTTGTCCAGTTTTCTCTGAAGATGCTACCTCCATCAATCTTCAGA
AAGATGAACTGGACCATGTGAGCTCTGTGGCTCACTAGTTTTTCAGCACATTAGTTAGTTCTGAAGAGTAGTTTTTCTTG
TATGATTTGATTATGTCCAATTGAATTCAGCTTCAGTCTGAAGAGAACTGTTAAGGAACAGGATTAGTACTGTTCTAGGA
TTGTCATTCAGGCAACTGTACCGGACGGCTACATGTCATTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5729.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis