Browse Element(s) Details


OsAffx.5787.1.S1_at

Description tigr:9636.m01129
TID=OsAffx.5787.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1150010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g11459NANA8+6719253..6719424NA
LOC_Os08g11470Os.53418.1.S1_at11/118+6722113..6726423transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g11470OsAffx.18618.1.S1_at1/118+6722113..6726423transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g11480Os.50425.1.S1_at10/118+6729401..6733397expressed protein
LOC_Os08g11480Os.27064.1.S2_at3/118+6729401..6733397expressed protein
LOC_Os08g11490OsAffx.29153.1.S1_at11/118+6736141..6736536hypothetical protein
LOC_Os08g11500OsAffx.5787.1.S1_at10/118+6739502..6741280hypothetical protein
LOC_Os08g11510OsAffx.29154.1.S1_at11/118+6745757..6746038hypothetical protein
LOC_Os08g11520OsAffx.29155.1.S1_at11/118+6747298..6748956hypothetical protein
LOC_Os08g11530Os.45173.1.S1_x_at1/118+6752314..6753508retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11540Os.46715.1.S1_x_at1/118+6755789..6758661retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11540Os.56292.1.S1_x_at1/118+6755789..6758661retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11540Os.56292.1.S1_at1/118+6755789..6758661retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11540Os.46715.1.S1_at1/118+6755789..6758661retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11550NANA8+6761389..6761724hypothetical protein
LOC_Os08g11560NANA8+6764696..6765953retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11570OsAffx.31813.1.S1_x_at2/118+6766240..6772101retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5787.1.S1_at--852--10211Chr08:6740122..6740146 (25 bp)
TATTAATCGGCGGTGGACGCACTTG
LOC_Os08g11500
OsAffx.5787.1.S1_at--75--8091Chr08:6740108..6740132 (25 bp)
GGACGCACTTGGAGCCATTTGTCAA
LOC_Os08g11500
OsAffx.5787.1.S1_at--310--10031Chr08:6740078..6740102 (25 bp)
TAGAAGGGATGTTGCTCCTCACATT
LOC_Os08g11500
OsAffx.5787.1.S1_at--244--9111Chr08:6740036..6740060 (25 bp)
TGCTGCACACAATCACAATGGCTTA
LOC_Os08g11500
OsAffx.5787.1.S1_at--77--2291NONE
AAATGCTGTATCCACGCTGCAGAGC
NONE
OsAffx.5787.1.S1_at--812--1111Chr08:6739849..6739873 (25 bp)
AGTGTTGGACTTTCATTATCGTATC
LOC_Os08g11500
OsAffx.5787.1.S1_at--468--2211Chr08:6739803..6739827 (25 bp)
ACAACGTGGATATCTCCCTCAGTAC
LOC_Os08g11500
OsAffx.5787.1.S1_at--644--10291Chr08:6739744..6739768 (25 bp)
TTTCCTTGGAGGACTCAGCACGAGC
LOC_Os08g11500
OsAffx.5787.1.S1_at--112--111Chr08:6739598..6739622 (25 bp)
ATTCGTCTGGCTATACATGGCATCC
LOC_Os08g11500
OsAffx.5787.1.S1_at--554--7531Chr08:6739555..6739579 (25 bp)
GTGGCACAGCCTATCGAGACTTCAA
LOC_Os08g11500
OsAffx.5787.1.S1_at--816--2631Chr08:6739532..6739556 (25 bp)
AACCTCATCTCGAGATGCCTCTGGA
LOC_Os08g11500
Target Sequence 
TATTAATCGGCGGTGGACGCACTTGGAGCCATTTGTCAAGGAGATAGAAGGGATGTTGCTCCTCACATTTTCTTCAACCA
TAATTGTGCTGCACACAATCACAATGGCTTACTTGATGAAGAGTAATGCAAATGCTGTATCCACGCTGCAGAGCGGAATT
GCAAATAGTGTTGGACTTTCATTATCGTATCTAAATAAGGAAATCCTTGACCACAACGTGGATATCTCCCTCAGTACTCT
CATAGAGAGATTGAAAAATGCACCTGTTGAATTTCCTTGGAGGACTCAGCACGAGCAGCACGAGGCGGTTCTCGAGGAGT
TGAGAGACATTTGGATGAGGCTCCTCATCTACACCGCCGGCAAGTCCAGGCCGGAGGGACACGCCGCGCATCTGGCCAAA
GGAGGGGAACTCCTCACATTCGTCTGGCTATACATGGCATCCATGGGTGTTGGGGATGGCGTGGCACAGCCTATCGAGAC
TTCAACCTCATCTCGAGATGCCTCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5787.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis