Browse Element(s) Details


OsAffx.5908.1.S1_at

Description tigr:9636.m02336
TID=OsAffx.5908.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2388011/11No apical meristem protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23829OsAffx.29322.1.S1_x_at10/118+14298743..14300137hypothetical protein
LOC_Os08g23840NANA8+14302066..14305267retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23849OsAffx.29322.1.S1_x_at6/118+14306118..14306489hypothetical protein
LOC_Os08g23860NANA8+14308418..14311619retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23870Os.5325.1.S1_at11/118+14317327..14318137Late embryogenesis abundant group 1 family protein, expressed
LOC_Os08g23880OsAffx.5908.1.S1_at11/118+14321366..14322709No apical meristem protein
LOC_Os08g23890OsAffx.25936.1.S1_s_at11/118+14326458..14329378transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23890OsAffx.25936.7.S1_s_at11/118+14326458..14329378transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23890OsAffx.25936.2.S1_x_at3/118+14326458..14329378transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23890OsAffx.25936.5.S1_x_at1/118+14326458..14329378transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23900NANA8+14331826..14332278hypothetical protein
LOC_Os08g23910Os.10827.1.S1_x_at11/118+14332977..14337392transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23910Os.46055.2.S1_x_at6/118+14332977..14337392transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23920Os.20602.2.S1_x_at10/118+14340109..14342289hAT family dimerisation domain containing protein
LOC_Os08g23930Os.26442.1.S1_at11/118+14343073..14349437ENT domain containing protein, expressed
LOC_Os08g23930Os.57545.1.S1_x_at1/118+14343073..14349437ENT domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5908.1.S1_at--8--2431Chr08:14322171..14322195 (25 bp)
AAAACTGCTTCTTGCCAGGCCAAGG
LOC_Os08g23880
OsAffx.5908.1.S1_at--900--3111Chr08:14322232..14322256 (25 bp)
AATATTCTCGTTGCCGGAGCATCAG
LOC_Os08g23880
OsAffx.5908.1.S1_at--360--5931Chr08:14322248..14322272 (25 bp)
GAGCATCAGTGCAGCCAAGAACAGT
LOC_Os08g23880
OsAffx.5908.1.S1_at--421--2751Chr08:14322264..14322288 (25 bp)
AAGAACAGTACTGCCATCACGACGA
LOC_Os08g23880
OsAffx.5908.1.S1_at--374--391Chr08:14322279..14322303 (25 bp)
ATCACGACGACCAGCAAGACTGCGT
LOC_Os08g23880
OsAffx.5908.1.S1_at--38--10711Chr08:14322305..14322329 (25 bp)
TTGCCGGAGCAACACAGCCAAGAAC
LOC_Os08g23880
OsAffx.5908.1.S1_at--883--4251Chr08:14322371..14322395 (25 bp)
CCGGAGCCGATCGACCAGGAGGAAC
LOC_Os08g23880
OsAffx.5908.1.S1_at--447--3931Chr08:14322412..14322436 (25 bp)
CGGCGAGCCGCAGCATGAACAACAA
LOC_Os08g23880
OsAffx.5908.1.S1_at--816--4691Chr08:14322454..14322478 (25 bp)
GCGGCAGGCTCTTCTTGATTATGAT
LOC_Os08g23880
OsAffx.5908.1.S1_at--647--711Chr08:14322474..14322498 (25 bp)
ATGATGATGGGAAGCTCCTGCCGCC
LOC_Os08g23880
OsAffx.5908.1.S1_at--466--6131Chr08:14322644..14322668 (25 bp)
GAGGGCTGTTGGTCTGGACCTCTTC
LOC_Os08g23880
Target Sequence 
AAAACTGCTTCTTGCCAGGCCAAGGCAACCAAGAACTGTACTACAACGACGAGCAGCAGCAAATATTCTCGTTGCCGGAG
CATCAGTGCAGCCAAGAACAGTACTGCCATCACGACGACCAGCAAGACTGCGTCTTGCCGGAGCAACACAGCCAAGAACT
ACACGGGTACAACAACGAAGAACAAGGATACCTCTTGCCGCCGGAGCCGATCGACCAGGAGGAACAAGCCCTCTTCGTCG
GCGGCGAGCCGCAGCATGAACAACAACCCTTGACGTCAACCCCGCGGCAGGCTCTTCTTGATTATGATGATGGGAAGCTC
CTGCCGCCGGTCGGCGTCAACGGCGCCATCGCGATCCCGCCGCAGGACGCCGCCGTGGCGTCCAACGACGACGACGGTGG
GCAGGCTACGGAAGCGCCGGCTGCGAAGATGACGGCGGAGGAGAAGAAGTGGTTCATGGAAGAGTTATTGACCGAGGGCT
GTTGGTCTGGACCTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5908.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis