Browse Element(s) Details


OsAffx.5914.1.S1_at

Description tigr:9636.m02419
TID=OsAffx.5914.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2470011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g24650NANA8+14763560..14769655retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g24660OsAffx.29532.2.S1_at2/118+14771976..14773455transposon protein, putative, unclassified
LOC_Os08g24660OsAffx.29532.2.S1_x_at1/118+14771976..14773455transposon protein, putative, unclassified
LOC_Os08g24670OsAffx.29332.1.S1_at11/118+14776210..14777124Legume lectins beta domain containing protein, expressed
LOC_Os08g24680OsAffx.22711.4.A1_x_at2/118+14779169..14782696retrotransposon protein, putative, unclassified
LOC_Os08g24680Os.27189.2.S1_at1/118+14779169..14782696retrotransposon protein, putative, unclassified
LOC_Os08g24680OsAffx.22711.2.S1_x_at1/118+14779169..14782696retrotransposon protein, putative, unclassified
LOC_Os08g24680OsAffx.22711.4.A1_at1/118+14779169..14782696retrotransposon protein, putative, unclassified
LOC_Os08g24680OsAffx.8420.1.S1_at1/118+14779169..14782696retrotransposon protein, putative, unclassified
LOC_Os08g24680OsAffx.22927.1.S1_x_at1/118+14779169..14782696retrotransposon protein, putative, unclassified
LOC_Os08g24690OsAffx.21171.3.S1_x_at2/118+14783166..14786032retrotransposon protein, putative, unclassified
LOC_Os08g24690OsAffx.21171.4.S1_x_at1/118+14783166..14786032retrotransposon protein, putative, unclassified
LOC_Os08g24700OsAffx.5914.1.S1_at11/118+14794450..14794908hypothetical protein
LOC_Os08g24710NANA8+14800237..14803511retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5914.1.S1_at--1071--4611Chr08:14794480..14794504 (25 bp)
GCGGGTAGATCTAGCTACGAGACTC
LOC_Os08g24700
OsAffx.5914.1.S1_at--9--10011Chr08:14794491..14794515 (25 bp)
TAGCTACGAGACTCATGGGCGTGGA
LOC_Os08g24700
OsAffx.5914.1.S1_at--876--4691Chr08:14794653..14794677 (25 bp)
GCGGCAGCAGGAATTGGGCACAGGT
LOC_Os08g24700
OsAffx.5914.1.S1_at--702--4691Chr08:14794783..14794807 (25 bp)
GCGGCAGCAGGAATACTCGCCACCA
LOC_Os08g24700
OsAffx.5914.1.S1_at--849--5051Chr08:14794786..14794810 (25 bp)
GCAGCAGGAATACTCGCCACCATCT
LOC_Os08g24700
OsAffx.5914.1.S1_at--267--471Chr08:14794807..14794831 (25 bp)
ATCTCCCGGCGGTTCTTCAGCAAAT
LOC_Os08g24700
OsAffx.5914.1.S1_at--896--8351Chr08:14794814..14794838 (25 bp)
GGCGGTTCTTCAGCAAATCTATCCA
LOC_Os08g24700
OsAffx.5914.1.S1_at--871--6732Chr08:14794818..14794842 (25 bp)
GTTCTTCAGCAAATCTATCCAGGTG
LOC_Os08g24700
OsAffx.5914.1.S1_at--451--2271Chr08:14794828..14794852 (25 bp)
AAATCTATCCAGGTGTATTCTTCCC
LOC_Os08g24700
OsAffx.5914.1.S1_at--1046--10131Chr08:14794833..14794857 (25 bp)
TATCCAGGTGTATTCTTCCCTTCTC
LOC_Os08g24700
OsAffx.5914.1.S1_at--697--10651Chr08:14794848..14794872 (25 bp)
TTCCCTTCTCCCATGGAGGCAAGCA
LOC_Os08g24700
Target Sequence 
GCGGGTAGATCTAGCTACGAGACTCATGGGCGTGGATGGATCCGGCGGCGGCACACATGGGCACAGGTGGATCCGACGGC
GGCGGAGCTCGTGAGAGGACTTCGGCTGCAACGGTGCTCGTGGGTGGGCGTGAGTGGATCCGGCGACGACGCTCGCGGGC
GCGGGTGTATCCGGCGGCAGCAGGAATTGGGCACAGGTGGATCCGACGGCGGCGGAGCTCGTGAGAGGACTTCGGCTGCA
ACGGTGCTCGTGGGTGGGCGTGAGTGGATCCGGCGACGACGCTCGCGGGCGCGGGTGTATCCGGCGGCAGCAGGAATACT
CGCCACCATCTCCCGGCGGTTCTTCAGCAAATCTATCCAGGTGTATTCTTCCCTTCTCCCATGGAGGCAAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5914.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis