Browse Element(s) Details


OsAffx.5964.1.S1_at

Description tigr:9636.m02812
TID=OsAffx.5964.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2842011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28410OsAffx.29399.1.S1_at11/118+17205933..17216128Retinal pigment epithelial membrane protein, expressed
LOC_Os08g28410Os.50043.1.A1_at1/118+17205933..17216128Retinal pigment epithelial membrane protein, expressed
LOC_Os08g28420OsAffx.5964.1.S1_at11/118+17216612..17217773hypothetical protein
LOC_Os08g28430OsAffx.17209.1.S1_at11/118+17218761..17219235hypothetical protein
LOC_Os08g28430Os.25556.1.S1_x_at1/118+17218761..17219235hypothetical protein
LOC_Os08g28439OsAffx.22452.1.S1_x_at1/118+17222940..17223241NA
LOC_Os08g28450NANA8+17226929..17230663retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g28460OsAffx.29400.1.S1_at10/118+17234716..17239388NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5964.1.S1_at--491--2951Chr08:17216651..17216675 (25 bp)
AAGGCCCTAAGCTTCATTAGTGTCA
LOC_Os08g28420
OsAffx.5964.1.S1_at--1025--131Chr08:17216666..17216690 (25 bp)
ATTAGTGTCAAGGTCCCACGAGACG
LOC_Os08g28420
OsAffx.5964.1.S1_at--1040--7231Chr08:17216678..17216702 (25 bp)
GTCCCACGAGACGATTTCATGAGTA
LOC_Os08g28420
OsAffx.5964.1.S1_at--1114--10331Chr08:17216717..17216741 (25 bp)
TTTATCATCAATTTCCGGGACCTAC
LOC_Os08g28420
OsAffx.5964.1.S1_at--63--6251Chr08:17216764..17216788 (25 bp)
GATGGACATCAATCTCGTTGTTGCA
LOC_Os08g28420
OsAffx.5964.1.S1_at--385--371Chr08:17216771..17216795 (25 bp)
ATCAATCTCGTTGTTGCATTTTGCG
LOC_Os08g28420
OsAffx.5964.1.S1_at--1082--6651Chr08:17216783..17217228 (25 bp)
GTTGCATTTTGCGTGACCACTATAT
LOC_Os08g28420
OsAffx.5964.1.S1_at--467--5851Chr08:17217218..17217238 (21 bp)
GACCACTATATTTTATTCCCGAGCA
LOC_Os08g28420
OsAffx.5964.1.S1_at--559--91Chr08:17217232..17217426 (25 bp)
ATTCCCGAGCACGTAAATTTTATGT
LOC_Os08g28420
OsAffx.5964.1.S1_at--921--10411Chr08:17217421..17217445 (25 bp)
TTATGTCAAACATCACAGGCCAGTA
LOC_Os08g28420
OsAffx.5964.1.S1_at--7--2131Chr08:17217435..17217459 (25 bp)
ACAGGCCAGTAAAGGATGTGCAGAG
LOC_Os08g28420
Target Sequence 
AAGGCCCTAAGCTTCATTAGTGTCAAGGTCCCACGAGACGATTTCATGAGTAAAACCAATGAGATCTTTATCATCAATTT
CCGGGACCTACACGCCCTCTTCAAGCTCGATAAGATGGACATCAATCTCGTTGTTGCATTTTGCGTGACCACTATATTTT
ATTCCCGAGCACGTAAATTTTATGTCAAACATCACAGGCCAGTAAAGGATGTGCAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5964.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis