Browse Element(s) Details


OsAffx.5986.2.A1_at

Description tigr:9636.m03004
TID=OsAffx.5986.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3014010/11hypothetical protein
LOC_Os04g128805/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30110OsAffx.22387.1.S1_at1/118+18378823..18381832transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30120NANA8+18383764..18387357transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30129NANA8+18397138..18397497NA
LOC_Os08g30140OsAffx.5986.2.A1_at10/118+18404644..18407343hypothetical protein
LOC_Os08g30140OsAffx.7633.1.S1_at1/118+18404644..18407343hypothetical protein
LOC_Os08g30150NANA8+18409618..18410744oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g30160NANA8+18413604..18414123hypothetical protein
LOC_Os08g30170NANA8+18414576..18414989hypothetical protein
LOC_Os08g30180NANA8+18421075..18421710transposon protein, putative, unclassified
LOC_Os08g30190NANA8+18424646..18429174retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g30200OsAffx.22848.3.S1_x_at1/118+18429328..18430608retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g30200OsAffx.22848.4.S1_x_at1/118+18429328..18430608retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5986.2.A1_at--498--7132Chr09:17294415..17294439 (25 bp)
GTCTTTCTACTTCGCCGTTGAAAGC
NONE
OsAffx.5986.2.A1_at--266--7432Chr08:18407088..18407112 (25 bp)
GTGTTTGCGGACTCGAGGACCTCGA
LOC_Os08g30140
OsAffx.5986.2.A1_at--931--5791NONE
GACGCGGCCAAATCGACGACGAGGT
NONE
OsAffx.5986.2.A1_at--938--5772Chr08:18406620..18406644 (25 bp)
GACGAGGTTGCTACTTGATGCAGCT
LOC_Os08g30140
OsAffx.5986.2.A1_at--1046--8852Chr08:18406605..18406629 (25 bp)
TGATGCAGCTTGACGAGGGATGCTT
LOC_Os08g30140
OsAffx.5986.2.A1_at--6--10833Chr09:17293790..17293813 (24 bp)
TTGTGGCTGGCATGCCGGCAGCTAT
NONE
OsAffx.5986.2.A1_at--68--272Chr08:18406530..18406554 (25 bp)
ATATGACTGGTTGCTGTTGCTTCAA
LOC_Os08g30140
OsAffx.5986.2.A1_at--59--5431Chr08:18404802..18405060 (25 bp)
GACAGCCCGGCGCAGAAAAATGGTA
LOC_Os08g30140
OsAffx.5986.2.A1_at--874--2291Chr08:18404785..18404809 (25 bp)
AAATGGTACTTTCCCTGACCTCAAG
LOC_Os08g30140
OsAffx.5986.2.A1_at--535--8931Chr08:18404770..18404794 (25 bp)
TGACCTCAAGATCGACATTGACCTT
LOC_Os08g30140
OsAffx.5986.2.A1_at--533--9671Chr08:18404699..18404723 (25 bp)
TCACCACAATGACCGAGGCTATGAT
LOC_Os08g30140
Target Sequence 
GTCTTTCTACTTCGCCGTTGAAAGCGCCGCCGAACTCGACGACCAGCGCCTCTCGGGGGATGGTCTCTGGCCTCGACTTC
GGCCTCCTCAACTCGTCCCGCCCCGGCCCAATCCGCCGCGGCGCCGCCGTCAAGACCGGCACGCGCGTGTTTGCGGACTC
GAGGACCTCGACCCCGCCGCCTTCGAGTCGCCGTCTGCCGAGGAGGACGCGGCCAAATCGACGACGAGGTTGCTACTTGA
TGCAGCTTGACGAGGGATGCTTGTGGCTGGCATGCCGGCAGCTATGGGACGACGGACTGGGATGGAAATTGGATATGACT
GGTTGCTGTTGCTTCAAGATGAATGGGCCGACGACAGAGAATGACGCCGGCGACAGCCCGGCGCAGAAAAATGGTACTTT
CCCTGACCTCAAGATCGACATTGACCTTGTTGAACCCCACCACCCGCTTGTCGCCGTGCCACCTGGGGCCACCGTCACCA
CAATGACCGAGGCTATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5986.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis