Browse Element(s) Details


OsAffx.6015.1.S1_at

Description tigr:9636.m03381
TID=OsAffx.6015.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3374011/11Glycosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33720Os.13993.1.S1_at11/118+20921818..20924585Malate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os08g33730NANA8+20929688..20930134hypothetical protein
LOC_Os08g33740OsAffx.6015.1.S1_at11/118+20945297..20953346Glycosyltransferase, putative, expressed
LOC_Os08g33740OsAffx.14299.2.S1_at1/118+20945297..20953346Glycosyltransferase, putative, expressed
LOC_Os08g33750Os.49123.1.S1_at11/118+20957100..20959190myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009294biological_processDNA mediated transformation
GO:0009618biological_processresponse to pathogenic bacteria
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6015.1.S1_at--1075--9212Chr08:20952403..20952427 (25 bp)
TCCACCTTTGGTACGATTTCTTCTT
LOC_Os08g33740
OsAffx.6015.1.S1_at--481--7371Chr08:20952453..20952477 (25 bp)
GTGACATTCATCTACTACTGCTTTG
LOC_Os08g33740
OsAffx.6015.1.S1_at--554--8691Chr08:20952487..20952511 (25 bp)
TGTCCGTTTGGTTGCCTGAAATCGA
LOC_Os08g33740
OsAffx.6015.1.S1_at--700--7911Chr08:20952527..20952551 (25 bp)
GGTTGTCTATGTTCCTACAGTCATC
LOC_Os08g33740
OsAffx.6015.1.S1_at--393--391Chr08:20952549..20952573 (25 bp)
ATCACCCTCTGCAAGGCTGTTGGAA
LOC_Os08g33740
OsAffx.6015.1.S1_at--137--5511Chr08:20952571..20952681 (25 bp)
GAACACCCAGTTCATTTCATCTTGT
LOC_Os08g33740
OsAffx.6015.1.S1_at--530--6371Chr08:20952682..20952706 (25 bp)
GATCCTCTGGGTCCTATTCGAGAAT
LOC_Os08g33740
OsAffx.6015.1.S1_at--142--751Chr08:20952705..20952729 (25 bp)
ATGTCATGTCATTGCACCGGATAAA
LOC_Os08g33740
OsAffx.6015.1.S1_at--1131--6251Chr08:20952851..20952875 (25 bp)
GATGTGGAGCTAACAACGCCTCTAA
LOC_Os08g33740
OsAffx.6015.1.S1_at--746--6611Chr08:20953151..20953175 (25 bp)
GTTGGCATCTGCATAATTCTGTCTG
LOC_Os08g33740
OsAffx.6015.1.S1_at--524--111Chr08:20953166..20953190 (25 bp)
ATTCTGTCTGGTTTCTACGATGTGC
LOC_Os08g33740
Target Sequence 
TCCACCTTTGGTACGATTTCTTCTTTGTTGGGAAGATTGCTGCTCACACAGTGACATTCATCTACTACTGCTTTGTGATC
CCGGTGTCCGTTTGGTTGCCTGAAATCGAAATTCCTCTCTGGGGGGTTGTCTATGTTCCTACAGTCATCACCCTCTGCAA
GGCTGTTGGAACACCCAGTTCATTTCATCTTGTGATCCTCTGGGTCCTATTCGAGAATGTCATGTCATTGCACCGGATAA
AGGCGGCAGTAACTGGTATTTTGGAGGCTGGCCGAGTCAATGAGTGGGTTGTCACCGAGAAGTTGGGAGACGCCAACAAG
ACAAAGCCAGACACCAATGGATCAGATGCTGTGAAAGTGATTGATGTGGAGCTAACAACGCCTCTAATACCAAAGCTCAA
GAAGAGACGAACGAGATTCTGGGACAAGTACCACTATTCAGAAATTTTTGTTGGCATCTGCATAATTCTGTCTGGTTTCT
ACGATGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6015.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis