Browse Element(s) Details


Os.49123.1.S1_at

Description gb:AK070338.1
DB_XREF= gi:32980362
TID=Os.49123.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49123 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023049D17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023049D17, full insert sequence.
FL= gb:AK070338.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3375011/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33740OsAffx.6015.1.S1_at11/118+20945297..20953346Glycosyltransferase, putative, expressed
LOC_Os08g33740OsAffx.14299.2.S1_at1/118+20945297..20953346Glycosyltransferase, putative, expressed
LOC_Os08g33750Os.49123.1.S1_at11/118+20957100..20959190myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os08g33760Os.10827.1.S1_x_at9/118+20983522..20987873transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g33760Os.46055.2.S1_x_at7/118+20983522..20987873transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g33760OsAffx.18122.1.S1_x_at1/118+20983522..20987873transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49123.1.S1_at--270--851Chr08:20957661..20957685 (25 bp)
ATGGAAGCTCATCAGAGATTGATCT
LOC_Os08g33750
Os.49123.1.S1_at--732--5151Chr08:20957524..20957548 (25 bp)
GCAACCAGGCTTTTGAGCAATGTCT
LOC_Os08g33750
Os.49123.1.S1_at--844--1471Chr08:20957509..20957533 (25 bp)
AGCAATGTCTGCCTGCTACTGCAAC
LOC_Os08g33750
Os.49123.1.S1_at--523--4771Chr08:20957474..20957498 (25 bp)
GCTGCTACTCCTCATTCTATGATGA
LOC_Os08g33750
Os.49123.1.S1_at--724--10011Chr08:20957400..20957424 (25 bp)
TAGCTATGCAAGCATCTGGTTCTTG
LOC_Os08g33750
Os.49123.1.S1_at--155--3151Chr08:20957347..20957371 (25 bp)
AATTCGAATTGGTGGCTGGCCCAGC
LOC_Os08g33750
Os.49123.1.S1_at--874--9051Chr08:20957316..20957340 (25 bp)
TGCATGTGGCATGCTTGAGGTGCAA
LOC_Os08g33750
Os.49123.1.S1_at--580--7351Chr08:20957253..20957277 (25 bp)
GTGAATGATGCTTTAGGGACCAATG
LOC_Os08g33750
Os.49123.1.S1_at--317--1311Chr08:20957215..20957239 (25 bp)
AGATGGAATTGGTTTGCAGTGTAAT
LOC_Os08g33750
Os.49123.1.S1_at--897--7911Chr08:20957179..20957203 (25 bp)
GGTTGATTTTTCACAGCTGAGCTCA
LOC_Os08g33750
Os.49123.1.S1_at--498--5911Chr08:20957161..20957185 (25 bp)
GAGCTCAGTGTGGATCAAAGTTTAG
LOC_Os08g33750
Target Sequence 
ATGGAAGCTCATCAGAGATTGATCTGAACAGGTAGAGGCAGAGGAGGAAGAGAAGCAGCAGAAGCATCTGTGATGATGTG
CTGCTGTGCNNNNNNNNNNNNNNNNNNNGGNNNNNNGGCCNTNANGGCNGGGNCCNAGCAACCAGGCTTTTGAGCAATGT
CTGCCTGCTACTGCAACAGCTACTGCTGCTGCTACTCCTCATTCTATGATGATATATNTTTTACTTTAACTTATATATAT
ATATATATATATATATATATATAGCTATGCAAGCATCTGGTTCTTGTGTTNNTCACGTACCTGTAAAAAAAAATGGAATT
CGAATTGGTGGCTGGCCCAGCTGCAGATGCATGTGGCATGCTTGAGGTGCAAGAATATATAGAACTGTAGTAGTGTGGAT
TATGCAGCTAGTGAATGATGCTTTAGGGACCAATGGGATTTCCATGAAAGATGGAATTGGTTTGCAGTGTAATTTAAAGA
GCAAGGTTGATTTTTCACAGCTGAGCTCAGTGTGGATCAAAGTTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49123.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis