Browse Element(s) Details


OsAffx.6056.1.S1_at

Description tigr:9636.m03749
TID=OsAffx.6056.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3734011/11hypothetical protein
LOC_Os03g379201/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37280Os.10222.1.S1_s_at11/118+23428999..23433541PWWP domain containing protein, expressed
LOC_Os08g37290NANA8+23439736..23440545Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g37300Os.8621.1.S1_a_at11/118+23442724..23443461expressed protein
LOC_Os08g37310Os.21835.1.S1_at11/118+23443879..23446245Uncharacterized protein family UPF0029 containing protein, expressed
LOC_Os08g37320Os.10781.1.S1_at10/118+23446411..23449336ATP synthase D chain, mitochondrial, putative, expressed
LOC_Os08g37329NANA8+23451107..23451539NA
LOC_Os08g37340OsAffx.6056.1.S1_at11/118+23454181..23454528hypothetical protein
LOC_Os08g37340OsAffx.6056.1.S1_x_at11/118+23454181..23454528hypothetical protein
LOC_Os08g37350Os.11306.1.S1_at11/118+23460857..23468289Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os08g37360OsAffx.17377.1.S1_at11/118+23471844..23472276hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6056.1.S1_at--364--3831Chr08:23454350..23454374 (25 bp)
CTGCGCCCATGGACGTCGAAATCAC
LOC_Os08g37340
OsAffx.6056.1.S1_at--845--9151Chr08:23454349..23454373 (25 bp)
TGCGCCCATGGACGTCGAAATCACC
LOC_Os08g37340
OsAffx.6056.1.S1_at--140--4551Chr08:23454346..23454370 (25 bp)
GCCCATGGACGTCGAAATCACCGGG
LOC_Os08g37340
OsAffx.6056.1.S1_at--59--5771Chr08:23454339..23454363 (25 bp)
GACGTCGAAATCACCGGGGATGTTG
LOC_Os08g37340
OsAffx.6056.1.S1_at--461--3931Chr08:23454265..23454331 (25 bp)
CGGCGAGCGGATAATGCAGCATTGT
LOC_Os08g37340
OsAffx.6056.1.S1_at--427--4611Chr08:23454263..23454329 (25 bp)
GCGAGCGGATAATGCAGCATTGTTT
LOC_Os08g37340
OsAffx.6056.1.S1_at--748--3012Chr08:23454253..23454273 (21 bp)
AATGCAGCATTGTTTGATGATGGAT
LOC_Os08g37340
OsAffx.6056.1.S1_at--138--6251Chr08:23454235..23454259 (25 bp)
GATGGATGATGTTCACCTATATGTA
LOC_Os08g37340
OsAffx.6056.1.S1_at--25--8571Chr08:23454233..23454257 (25 bp)
TGGATGATGTTCACCTATATGTAGA
LOC_Os08g37340
OsAffx.6056.1.S1_at--694--8871Chr08:23454229..23454253 (25 bp)
TGATGTTCACCTATATGTAGAGGAT
LOC_Os08g37340
OsAffx.6056.1.S1_at--648--6751Chr08:23454225..23454249 (25 bp)
GTTCACCTATATGTAGAGGATGACC
LOC_Os08g37340
Target Sequence 
CTGCGCCCATGGACGTCGAAATCACCGGGGATGTTGGAGCCGGCGGCGAGCGGATAATGCAGCATTGTTTGATGATGGAT
GATGTTCACCTATATGTAGAGGATGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6056.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis