Browse Element(s) Details


OsAffx.6072.1.S1_at

Description tigr:9636.m03891
TID=OsAffx.6072.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=27668
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3861010/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38560Os.7659.1.S1_s_at5/118+24246249..24249917Leucine Rich Repeat family protein, expressed
LOC_Os08g38560Os.56750.1.S1_at5/118+24246249..24249917Leucine Rich Repeat family protein, expressed
LOC_Os08g38560OsAffx.30096.1.S1_x_at1/118+24246249..24249917Leucine Rich Repeat family protein, expressed
LOC_Os08g38560Os.56726.1.S1_x_at1/118+24246249..24249917Leucine Rich Repeat family protein, expressed
LOC_Os08g38570Os.19179.1.S1_at11/118+24251527..24256259transducin family protein, putative, expressed
LOC_Os08g38580Os.57036.1.S1_at11/118+24256547..24257619Harpin-induced protein 1 containing protein, expressed
LOC_Os08g38590OsAffx.6071.1.S1_at11/118+24258787..24261024SRF-type transcription factor family protein, expressed
LOC_Os08g38600Os.10254.1.S1_at11/118+24265096..24268481Copine family protein, expressed
LOC_Os08g38610OsAffx.6072.1.S1_at10/118+24269343..24273295pentatricopeptide, putative
LOC_Os08g38620Os.14799.1.S1_at11/118+24274864..24279963expressed protein
LOC_Os08g38630OsAffx.17407.1.S1_at11/118+24281436..24282002hypothetical protein
LOC_Os08g38640NANA8+24283586..24287882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g38650OsAffx.6073.1.S1_at11/118+24293566..24294862hypothetical protein
LOC_Os08g38660NANA8+24295998..24301351retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005739cellular_componentmitochondrion
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6072.1.S1_at--695--271Chr08:24270671..24270695 (25 bp)
ATATGGCATCTTCCCTAACACTGAA
LOC_Os08g38610
OsAffx.6072.1.S1_at--1058--9811Chr08:24270686..24270710 (25 bp)
TAACACTGAACACTATGGCTGCATC
LOC_Os08g38610
OsAffx.6072.1.S1_at--272--9051Chr08:24270705..24270729 (25 bp)
TGCATCATCGATCTCCTGGGAAGGG
LOC_Os08g38610
OsAffx.6072.1.S1_at--1100--9971Chr08:24270760..24270784 (25 bp)
TAGCGAGCCTATCTTCCCAGAGTGA
LOC_Os08g38610
OsAffx.6072.1.S1_at--1098--6351Chr08:24270783..24270807 (25 bp)
GATGCCACAGCATGGAGAGCCTTGC
LOC_Os08g38610
OsAffx.6072.1.S1_at--1033--1371Chr08:24270798..24270822 (25 bp)
AGAGCCTTGCTTGCGGCCTGCAGAG
LOC_Os08g38610
OsAffx.6072.1.S1_at--946--4451Chr08:24270813..24270837 (25 bp)
GCCTGCAGAGTCCATGGCAATGCCA
LOC_Os08g38610
OsAffx.6072.1.S1_at--840--3531Chr08:24270885..24270909 (25 bp)
CATCCATCAGATGCCATTCTTTTGT
LOC_Os08g38610
OsAffx.6072.1.S1_at--46--7911Chr08:24271002..24271026 (25 bp)
GGTTGCAGCTCCATAGAAGTGTCTT
LOC_Os08g38610
OsAffx.6072.1.S1_at--480--2871NONE
AAGTGTCTTGTTCATTTCTTTCCAA
NONE
OsAffx.6072.1.S1_at--652--3011Chr08:24271759..24271783 (25 bp)
AATGCAACCTGTTTCGTAGCATGGA
LOC_Os08g38610
Target Sequence 
ATATGGCATCTTCCCTAACACTGAACACTATGGCTGCATCATCGATCTCCTGGGAAGGGCGGGGCGGTTGGATGAAGCTT
ATGAGCTCATAGCGAGCCTATCTTCCCAGAGTGATGCCACAGCATGGAGAGCCTTGCTTGCGGCCTGCAGAGTCCATGGC
AATGCCAACCTGGGGAGGATGGTGCAGGCACGGTTGGATAACATGGACGACTACCATCCATCAGATGCCATTCTTTTGTC
AAATACATATGCATTGGAAAGCCGATGGGATGAGATTGCACATGTCAGAGATTCAGAAGATCAGAAAATTGTCAAGGACA
AGAAGGAACCAGGTTGCAGCTCCATAGAAGTGTCTTGTTCATTTCTTTCCAATGCAACCTGTTTCGTAGCATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6072.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis