Browse Element(s) Details


OsAffx.6075.1.S1_at

Description tigr:9636.m03899
TID=OsAffx.6075.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3868010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38640NANA8+24283586..24287882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g38650OsAffx.6073.1.S1_at11/118+24293566..24294862hypothetical protein
LOC_Os08g38660NANA8+24295998..24301351retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g38670OsAffx.6074.1.S1_at11/118+24309520..24310401hypothetical protein
LOC_Os08g38680OsAffx.6075.1.S1_at10/118+24310867..24314025hypothetical protein
LOC_Os08g38690OsAffx.17408.1.S1_at10/118+24314988..24324204expressed protein
LOC_Os08g38690Os.12614.1.A1_at1/118+24314988..24324204expressed protein
LOC_Os08g38700Os.33471.1.A1_at11/118+24331599..24335037BTB/POZ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6075.1.S1_at--477--6171NONE
GAGGATCATGTTGTTTGCTTGCTAC
NONE
OsAffx.6075.1.S1_at--173--4771Chr08:24312856..24312880 (25 bp)
GCTGCTCTTGTTCATCGTTTTTCGA
LOC_Os08g38680
OsAffx.6075.1.S1_at--57--831Chr08:24312817..24312841 (25 bp)
ATGGTTGCTGTACTTCATGACCCGA
LOC_Os08g38680
OsAffx.6075.1.S1_at--275--6651Chr08:24312535..24312559 (25 bp)
GTTGTTGAGCTGCATCTCTTGACTA
LOC_Os08g38680
OsAffx.6075.1.S1_at--411--9731Chr08:24312491..24312515 (25 bp)
TCAATTTTTTCCTGACTTGCCAATC
LOC_Os08g38680
OsAffx.6075.1.S1_at--845--6691Chr08:24311677..24311701 (25 bp)
GTTCCTGAACAGGTGCTCTGATGCA
LOC_Os08g38680
OsAffx.6075.1.S1_at--930--6351Chr08:24311608..24311632 (25 bp)
GATCCAATGGACGATGCTTCCTATT
LOC_Os08g38680
OsAffx.6075.1.S1_at--902--1311Chr08:24311576..24311600 (25 bp)
AGATGGATTGCTTGACGGCGGCCCA
LOC_Os08g38680
OsAffx.6075.1.S1_at--314--8351Chr08:24311560..24311584 (25 bp)
GGCGGCCCAGTTGATGCAGTCCAAG
LOC_Os08g38680
OsAffx.6075.1.S1_at--96--3652Chr08:24311522..24311546 (25 bp)
CTTCCCTTGCTTTCATTGTTAGACA
LOC_Os08g38680
OsAffx.6075.1.S1_at--728--8291Chr08:24311016..24311040 (25 bp)
GGCTTCGATACTGGACTCAACTACA
LOC_Os08g38680
Target Sequence 
GAGGATCATGTTGTTTGCTTGCTACAACCTGCTGCTCTTGTTCATCGTTTTTCGACTGGCCTTCAGTTAATGGTTGCTGT
ACTTCATGACCCGACAGTCATAACTCATAAGTCGGGGGCTGCCGTATTTGGGGTTCTCGAGGCTTTTGAGTCTCTTCGCC
TGATTGGCTGCCAGTCGGATGTTGTTGAGCTGCATCTCTTGACTAACCGCTGGTTGTGGGATGCTCAATTTTTTCCTGAC
TTGCCAATCCAATCAATGTCAGAAGGTTTCATGTTCCTGAACAGGTGCTCTGATGCATTAGAATCGGAGCTTCTAGCATG
TGTGGAGGGAATCAGCCTGGTGATCCAATGGACGATGCTTCCTATTGAAGTGGAGATGGATTGCTTGACGGCGGCCCAGT
TGATGCAGTCCAAGGAACCGGACCGTTCTTCCCTTGCTTTCATTGTTAGACAGATTAAAGGGCTGATCGATGGAGAGAGG
GAATTCATCATCAGGAAGGTAATCTTCAGGACAACATATTGGCTTCGATACTGGACTCAACTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6075.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis