Browse Element(s) Details


OsAffx.6093.1.S1_at

Description tigr:9636.m04072
TID=OsAffx.6093.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4025011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40200OsAffx.6092.1.S1_at11/118+25304354..25308010serine/threonine protein phosphatase, putative, expressed
LOC_Os08g40210NANA8+25308379..25308708expressed protein
LOC_Os08g40220NANA8+25310492..25310781hypothetical protein
LOC_Os08g40230Os.13654.1.S1_at11/118+25311620..25317222expressed protein
LOC_Os08g40240NANA8+25318120..25318545CP12 domain containing protein, expressed
LOC_Os08g40250OsAffx.6093.1.S1_at11/118+25328770..25335292expressed protein
LOC_Os08g40260Os.4610.1.A1_s_at11/118+25349618..25354614SBP domain containing protein, expressed
LOC_Os08g40260Os.10618.1.S1_s_at11/118+25349618..25354614SBP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010155biological_processregulation of proton transport
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6093.1.S1_at--64--4391Chr08:25334715..25334739 (25 bp)
GCCAATGCGGAAGCTACAGTGACTA
LOC_Os08g40250
OsAffx.6093.1.S1_at--181--4851Chr08:25334727..25334751 (25 bp)
GCTACAGTGACTAATGATGCTGATT
LOC_Os08g40250
OsAffx.6093.1.S1_at--313--6351Chr08:25334742..25334766 (25 bp)
GATGCTGATTCTAGCACCATAGAGA
LOC_Os08g40250
OsAffx.6093.1.S1_at--798--5491Chr08:25334765..25334789 (25 bp)
GAACAGTCGAGGAGTAGATCTTTCT
LOC_Os08g40250
OsAffx.6093.1.S1_at--736--9551Chr08:25334783..25334807 (25 bp)
TCTTTCTCAACATAGAGCTCTGAAG
LOC_Os08g40250
OsAffx.6093.1.S1_at--806--4191Chr08:25334815..25334839 (25 bp)
CCCCTACACTTAAGCAGCTGAATAA
LOC_Os08g40250
OsAffx.6093.1.S1_at--885--2791Chr08:25334838..25334862 (25 bp)
AAGATGGAGCCGATGCCATTGCCAC
LOC_Os08g40250
OsAffx.6093.1.S1_at--78--9191Chr08:25334851..25334875 (25 bp)
TGCCATTGCCACTGCGTAACAAGGG
LOC_Os08g40250
OsAffx.6093.1.S1_at--646--331Chr08:25334894..25334918 (25 bp)
ATACATTATGGTGGCTGTGGCTGCA
LOC_Os08g40250
OsAffx.6093.1.S1_at--841--8471Chr08:25334911..25334935 (25 bp)
TGGCTGCAGTGATCTCGGTGCTTGC
LOC_Os08g40250
OsAffx.6093.1.S1_at--344--9431Chr08:25334925..25334949 (25 bp)
TCGGTGCTTGCTTTGGTTGTGGCAA
LOC_Os08g40250
Target Sequence 
GCCAATGCGGAAGCTACAGTGACTAATGATGCTGATTCTAGCACCATAGAGAACAGTCGAGGAGTAGATCTTTCTCAACA
TAGAGCTCTGAAGAAGAGGCCCCCTACACTTAAGCAGCTGAATAAGATGGAGCCGATGCCATTGCCACTGCGTAACAAGG
GCAGAAGGAAGATGCGTCAATACATTATGGTGGCTGTGGCTGCAGTGATCTCGGTGCTTGCTTTGGTTGTGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6093.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis