Browse Element(s) Details


OsAffx.6102.1.S1_at

Description tigr:9636.m04182
TID=OsAffx.6102.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4122010/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41160Os.47463.1.S1_x_at4/118+25866293..25876009transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g41160Os.14491.2.S1_x_at3/118+25866293..25876009transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g41170OsAffx.21997.4.S1_at11/118+25880693..25881717BTB/POZ domain containing protein
LOC_Os08g41180OsAffx.21997.3.S1_x_at1/118+25882504..25883469BTB/POZ domain containing protein
LOC_Os08g41190OsAffx.6101.1.S1_at11/118+25887421..25888506BTB/POZ domain containing protein
LOC_Os08g41200OsAffx.17450.1.S1_at11/118+25890021..25890747speckle-type POZ protein, putative
LOC_Os08g41200OsAffx.6101.1.S1_at1/118+25890021..25890747speckle-type POZ protein, putative
LOC_Os08g41210OsAffx.17451.1.S1_at11/118+25891924..25893397expressed protein
LOC_Os08g41220OsAffx.6102.1.S1_at10/118+25895326..25899804BTB/POZ domain containing protein
LOC_Os08g41230OsAffx.17452.1.S1_at11/118+25904090..25906978BTB/POZ domain containing protein
LOC_Os08g41240OsAffx.17453.1.S1_at11/118+25911424..25912473BTB/POZ domain containing protein
LOC_Os08g41240OsAffx.17453.1.S1_x_at11/118+25911424..25912473BTB/POZ domain containing protein
LOC_Os08g41250Os.12227.1.S1_at11/118+25913926..25916839Signal recognition particle receptor beta subunit, putative, expressed
LOC_Os08g41260NANA8+25920151..25923460retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6102.1.S1_at--823--8551Chr08:25898034..25898058 (25 bp)
TGGAGGGCGACAGCCATCGTTGCAC
LOC_Os08g41220
OsAffx.6102.1.S1_at--816--6931Chr08:25897927..25897951 (25 bp)
GTAGTCTCCATCCTGACAACAGCGA
LOC_Os08g41220
OsAffx.6102.1.S1_at--351--10591NONE
TTCTGCCACACCCTTGATAATGGGT
NONE
OsAffx.6102.1.S1_at--207--1571Chr08:25896955..25896979 (25 bp)
AGCTTTGGTCTTTGGGCTGCTGGCA
LOC_Os08g41220
OsAffx.6102.1.S1_at--293--9132Chr08:28169815..28169836 (22 bp)
TGCTGGCAGCAGACGTGATGGTAAC
NONE
OsAffx.6102.1.S1_at--482--6292Chr08:28169924..28169948 (25 bp)
GATGTTGGTGCCCAAAAGCTTTGAA
NONE
OsAffx.6102.1.S1_at--1081--2691Chr08:25896819..25896843 (25 bp)
AAGCTTTGAATCTGACCACGCAAGG
LOC_Os08g41220
OsAffx.6102.1.S1_at--224--1851Chr08:25896802..25896826 (25 bp)
ACGCAAGGGTTCGTGGCCAGCAACA
LOC_Os08g41220
OsAffx.6102.1.S1_at--868--7531Chr08:25896794..25896814 (21 bp)
GTGGCCAGCAACAACCGAAAGTTTG
LOC_Os08g41220
OsAffx.6102.1.S1_at--51--9211Chr08:25895556..25895580 (25 bp)
TGCCAAGGGCTTATGGCCGGCAACA
LOC_Os08g41220
OsAffx.6102.1.S1_at--1039--2472Chr12:16111876..16111898 (23 bp)
AACACCGCAACAGGAGACTGCCAGA
NONE
Target Sequence 
TGGAGGGCGACAGCCATCGTTGCACGGAGGGGGAGGAGGCGGGGAGGCCCTCAGCGCGTCGATCCTGGTGGCCTCAACTC
CCCGCGTCTTCACCCGCGACGCCGCCGGTAGTCTCCATCCTGACAACAGCGACGCTGCCGGTGTCCATCCTACTGCTTCT
GCCACACCCTTGATAATGGGTGCTAGAAAGCTATGTGTAGCTTTGGTCTTTGGGCTGCTGGCAGCAGACGTGATGGTAAC
AAGCATATTGAAGGGGTCGTTTGTTTTGATGTTGGTGCCCAAAAGCTTTGAATCTGACCACGCAAGGGTTCGTGGCCAGC
AACAACCGAAAGTTTGCCAAGGGCTTATGGCCGGCAACACCGCAACAGGAGACTGCCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6102.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis