Browse Element(s) Details


OsAffx.6178.1.S1_at

Description tigr:9637.m00350
TID=OsAffx.6178.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g050209/11tyrosine specific protein phosphatase family protein, putative, expressed
LOC_Os07g080401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g04970NANA9+2672952..2676041retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04980OsAffx.29724.4.S1_at1/119+2679970..2680590hypothetical protein
LOC_Os09g04990Os.54379.1.S1_at11/119+2684795..2687286Cytoskeletal protein, putative, expressed
LOC_Os09g05000NANA9+2692800..2693939retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g05020Os.38393.1.S1_at11/119+2696308..2701656tyrosine specific protein phosphatase family protein, putative, expressed
LOC_Os09g05020Os.23189.1.S1_at10/119+2696308..2701656tyrosine specific protein phosphatase family protein, putative, expressed
LOC_Os09g05020OsAffx.6178.1.S1_at9/119+2696308..2701656tyrosine specific protein phosphatase family protein, putative, expressed
LOC_Os09g05030Os.54128.1.S1_at11/119+2702214..2706348Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os09g05030Os.54128.1.S2_at11/119+2702214..2706348Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os09g05040OsAffx.17572.1.S1_at10/119+2710085..2711514hypothetical protein
LOC_Os09g05050NANA9+2715010..2715649retrotransposon, putative, centromere-specific
LOC_Os09g05060OsAffx.19542.3.S1_x_at3/119+2718889..2722767retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g05070OsAffx.8201.1.S1_x_at1/119+2725587..2730585retrotransposon protein, putative, unclassified
LOC_Os09g05070OsAffx.22699.1.S1_x_at1/119+2725587..2730585retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0004721molecular_functionphosphoprotein phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6178.1.S1_at--367--9231Chr09:2699237..2699261 (25 bp)
TCCAGCATGGGCAGTACTGCAGACA
LOC_Os09g05020
OsAffx.6178.1.S1_at--38--1198Chr09:2699249..2699273 (25 bp)
AGTACTGCAGACAATCCCCATTGGT
LOC_Os09g05020
OsAffx.6178.1.S1_at--525--5051Chr09:2699255..2699279 (25 bp)
GCAGACAATCCCCATTGGTCTTTTT
LOC_Os09g05020
OsAffx.6178.1.S1_at--572--7811Chr09:2699271..2699295 (25 bp)
GGTCTTTTTCCCCTTCTACTGGCAT
LOC_Os09g05020
OsAffx.6178.1.S1_at--513--3651Chr09:2699283..2699307 (25 bp)
CTTCTACTGGCATACTTTAGCTTGT
LOC_Os09g05020
OsAffx.6178.1.S1_at--221--4951Chr09:2699292..2699316 (25 bp)
GCATACTTTAGCTTGTTCAGGATCA
LOC_Os09g05020
OsAffx.6178.1.S1_at--263--3231NONE
CAAGTTTTTATGTTTCAGTCCAGAA
NONE
OsAffx.6178.1.S1_at--713--7251Chr09:2700668..2700687 (20 bp)
GTCCAGAACTAGGTTTTGGTACTGA
LOC_Os09g05020
OsAffx.6178.1.S1_at--827--10031Chr09:2700691..2700715 (25 bp)
TAGATGTTGCTTGCAGGAGCCCTTT
LOC_Os09g05020
OsAffx.6178.1.S1_at--294--8811Chr09:2700695..2700719 (25 bp)
TGTTGCTTGCAGGAGCCCTTTGTGA
LOC_Os09g05020
OsAffx.6178.1.S1_at--858--9011NONE
TGCAAGCGTGGAAAGAATCTCAAAT
NONE
Target Sequence 
TCCAGCATGGGCAGTACTGCAGACAATCCCCATTGGTCTTTTTCCCCTTCTACTGGCATACTTTAGCTTGTTCAGGATCA
AGTTTTTATGTTTCAGTCCAGAACTAGGTTTTGGTACTGAAAATAGATGTTGCTTGCAGGAGCCCTTTGTGAACATACCT
GAAGATAGAATCCGTGAGGCTCTAAAAGTTGTGCTAGATGTGGCAAATCACCCGGTGCTTATTCACTGCAAGCGTGGAAA
GAATCTCAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6178.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis