Browse Element(s) Details


OsAffx.6190.1.S1_at

Description tigr:9637.m00449
TID=OsAffx.6190.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0693011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g06900NANA9+3317012..3320815transposon protein, putative, unclassified
LOC_Os09g06910Os.39427.1.A1_s_at11/119+3324212..3331210retrotransposon protein, putative, unclassified
LOC_Os09g06910Os.39427.1.A1_at11/119+3324212..3331210retrotransposon protein, putative, unclassified
LOC_Os09g06910OsAffx.11140.1.S1_at1/119+3324212..3331210retrotransposon protein, putative, unclassified
LOC_Os09g06910OsAffx.28025.4.S1_x_at1/119+3324212..3331210retrotransposon protein, putative, unclassified
LOC_Os09g06920OsAffx.11140.1.S1_at2/119+3334140..3340666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g06930OsAffx.6190.1.S1_at11/119+3342946..3343222hypothetical protein
LOC_Os09g06940NANA9+3347092..3347772hypothetical protein
LOC_Os09g06950Os.55510.1.S1_at10/119+3354810..3355603expressed protein
LOC_Os09g06960NANA9+3361805..3362047retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6190.1.S1_at--425--2391Chr09:3342979..3343003 (25 bp)
AAACTGTCGTGCCTTCTTCTCCAGC
LOC_Os09g06930
OsAffx.6190.1.S1_at--247--4391Chr09:3343004..3343028 (25 bp)
GCCAAGTCGAGGACGATAGTAACCT
LOC_Os09g06930
OsAffx.6190.1.S1_at--123--851Chr09:3343008..3343032 (25 bp)
AGTCGAGGACGATAGTAACCTTGGT
LOC_Os09g06930
OsAffx.6190.1.S1_at--291--4071Chr09:3343011..3343035 (25 bp)
CGAGGACGATAGTAACCTTGGTGCT
LOC_Os09g06930
OsAffx.6190.1.S1_at--891--10831Chr09:3343028..3343052 (25 bp)
TTGGTGCTGTTACTCTCCTCTTCCA
LOC_Os09g06930
OsAffx.6190.1.S1_at--688--7291Chr09:3343031..3343055 (25 bp)
GTGCTGTTACTCTCCTCTTCCAGGG
LOC_Os09g06930
OsAffx.6190.1.S1_at--516--9891Chr09:3343038..3343062 (25 bp)
TACTCTCCTCTTCCAGGGGTCAGGG
LOC_Os09g06930
OsAffx.6190.1.S1_at--1074--7811Chr09:3343055..3343167 (25 bp)
GGTCAGGGCTAGTCCTGATTGTGTT
LOC_Os09g06930
OsAffx.6190.1.S1_at--96--1091Chr09:3343149..3343171 (23 bp)
AGGGCTAGTCCTGATTGTGTTCAGA
LOC_Os09g06930
OsAffx.6190.1.S1_at--346--4871Chr09:3343150..3343174 (25 bp)
GCTAGTCCTGATTGTGTTCAGAGAA
LOC_Os09g06930
OsAffx.6190.1.S1_at--7--1151Chr09:3343153..3343177 (25 bp)
AGTCCTGATTGTGTTCAGAGAAATA
LOC_Os09g06930
Target Sequence 
AAACTGTCGTGCCTTCTTCTCCAGCGCCAAGTCGAGGACGATAGTAACCTTGGTGCTGTTACTCTCCTCTTCCAGGGGTC
AGGGCTAGTCCTGATTGTGTTCAGAGAAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6190.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis