Browse Element(s) Details


OsAffx.6257.1.S1_at

Description tigr:9637.m00987
TID=OsAffx.6257.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1265011/11Pyrophosphate-fructose 6-phosphate 1-phosphotransferase alpha subunit, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12580NANA9+7215986..7216375hypothetical protein
LOC_Os09g12590NANA9+7217962..7219515Sugar transporter family protein, expressed
LOC_Os09g12600Os.4694.1.S1_at11/119+7221188..7224657Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
LOC_Os09g12610OsAffx.29820.1.S1_at11/119+7225823..7226459hypothetical protein
LOC_Os09g12620Os.52109.1.S1_at11/119+7230651..7231571expressed protein
LOC_Os09g12630Os.55367.1.S1_at10/119+7232384..7233198expressed protein
LOC_Os09g12640OsAffx.6256.1.S1_at11/119+7234109..7234508hypothetical protein
LOC_Os09g12650OsAffx.6257.1.S1_at11/119+7239336..7243604Pyrophosphate-fructose 6-phosphate 1-phosphotransferase alpha subunit, putative
LOC_Os09g12660Os.3122.1.S1_at11/119+7244359..7248813Glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor, putative, expressed
LOC_Os09g12670OsAffx.24421.1.S1_at7/119+7250983..7251387transposon protein, putative, unclassified
LOC_Os09g12680NANA9+7256831..7257067hypothetical protein
LOC_Os09g12690NANA9+7264424..7266380retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g12700NANA9+7266567..7269153retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0005945cellular_component6-phosphofructokinase complex
GO:0003872molecular_function6-phosphofructokinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6257.1.S1_at--1101--3131Chr09:7241925..7241949 (25 bp)
AATTACTTGCCTCCTTTCATAAGAA
LOC_Os09g12650
OsAffx.6257.1.S1_at--577--5291Chr09:7242326..7242350 (25 bp)
GAAGGAAATTCAGCTCCGTTTGCCA
LOC_Os09g12650
OsAffx.6257.1.S1_at--320--6851Chr09:7242343..7242367 (25 bp)
GTTTGCCACTTTTTCGGGTATCAAG
LOC_Os09g12650
OsAffx.6257.1.S1_at--327--6171Chr09:7242371..7242395 (25 bp)
GAGGATCCTTACCATCAAACTTCGA
LOC_Os09g12650
OsAffx.6257.1.S1_at--642--2051Chr09:7242389..7242412 (24 bp)
ACTTCGATTGTGATTACGCCTATGC
LOC_Os09g12650
OsAffx.6257.1.S1_at--626--7251Chr09:7242803..7242827 (25 bp)
GTCCTGGAGCTGTTCCTACTGGAAA
LOC_Os09g12650
OsAffx.6257.1.S1_at--1103--2931Chr09:7242865..7243222 (25 bp)
AAGGCTTATGCGCTCCTGAGAGAGA
LOC_Os09g12650
OsAffx.6257.1.S1_at--146--2671Chr09:7243223..7243247 (25 bp)
AAGCCTCGAGCTTCCTATTAGATGA
LOC_Os09g12650
OsAffx.6257.1.S1_at--261--6771Chr09:7243297..7243321 (25 bp)
GTTAAGCCAATCACACTGACTGTCG
LOC_Os09g12650
OsAffx.6257.1.S1_at--351--5711Chr09:7243330..7243354 (25 bp)
GACTACCTGGGTGACATTGAGCTAC
LOC_Os09g12650
OsAffx.6257.1.S1_at--111--7311Chr09:7243545..7243569 (25 bp)
GTGCTGAAGGTTATGTCGGCTCCCT
LOC_Os09g12650
Target Sequence 
AATTACTTGCCTCCTTTCATAAGAAGAGAGATTGATACTGAGCAACTCTTAGCTCATTTAGTAGAAGCAGAAATGAACAA
GCGAATGAAAGAGGGGAAATACATTGGAAGGAAATTCAGCTCCGTTTGCCACTTTTTCGGGTATCAAGCGCGAGGATCCT
TACCATCAAACTTCGATTGTGATTACGCCTATGCAATGATGAGTGTGAAGAGGCACTCACGCAGTCCTGGAGCTGTTCCT
ACTGGAAAGCCAGTTATCCATCCTTCTCCAGTTGACCTGCAAGGGAAGGCTTATGCGCTCCTGAGAGAGAAAGCCTCGAG
CTTCCTATTAGATGATTTCTACAGAACTCCAGGGGGCATTCAATTTGATGGATCTGGAACAAATGTTAAGCCAATCACAC
TGACTGTCGAAGACCAAGACTACCTGGGTGACATTGAGCTACTGCAAGACTACTTGGAGAAGGTGAGGAACATTGTGAAG
CCCGGATGCTCGAGGGAGATCCTGAAGGCGGCGATAAGCTCGATGTCATCAGTGAAGGATGTGCTGAAGGTTATGTCGGC
TCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6257.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis