Browse Element(s) Details


OsAffx.6336.1.S1_at

Description tigr:9637.m01665
TID=OsAffx.6336.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1969011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19660OsAffx.17785.1.S1_x_at11/119+11760978..11761366NA
LOC_Os09g19670Os.14058.1.S1_at1/119+11766727..11770432retrotransposon protein, putative, unclassified
LOC_Os09g19680Os.10380.1.S1_at4/119+11777331..11784017ABC-type transport protein, putative, expressed
LOC_Os09g19690OsAffx.6336.1.S1_at11/119+11786006..11786278hypothetical protein
LOC_Os09g19700Os.8030.1.S1_at11/119+11788181..11792358Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os09g19710Os.23381.1.A1_at6/119+11795029..11797947hypersensitive-induced response protein, putative, expressed
LOC_Os09g19720Os.57110.1.S1_at11/119+11798225..11799570expressed protein
LOC_Os09g19734Os.3441.1.S1_s_at11/119+11804588..11814324isochorismate synthases family protein, expressed
LOC_Os09g19734Os.3441.1.S1_at11/119+11804588..11814324isochorismate synthases family protein, expressed
LOC_Os09g19734Os.6334.1.S1_at11/119+11804588..11814324isochorismate synthases family protein, expressed
LOC_Os09g19734Os.39720.1.A1_x_at3/119+11804588..11814324isochorismate synthases family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6336.1.S1_at--1141--2491Chr09:11786042..11786066 (25 bp)
AACATGCGCCAGAGCCGGTCGGTGC
LOC_Os09g19690
OsAffx.6336.1.S1_at--1158--8111Chr09:11786070..11786094 (25 bp)
GGACTGAGACGATGGGCGTGCCGAT
LOC_Os09g19690
OsAffx.6336.1.S1_at--227--3751Chr09:11786122..11786146 (25 bp)
CTCACCGCCGAAGAATGGCTGGATC
LOC_Os09g19690
OsAffx.6336.1.S1_at--74--2971Chr09:11786135..11786159 (25 bp)
AATGGCTGGATCACGCATGAAGAAA
LOC_Os09g19690
OsAffx.6336.1.S1_at--425--391Chr09:11786144..11786168 (25 bp)
ATCACGCATGAAGAAATCCACGAGA
LOC_Os09g19690
OsAffx.6336.1.S1_at--92--591Chr09:11786159..11786183 (25 bp)
ATCCACGAGAGCACGGATCACGCAT
LOC_Os09g19690
OsAffx.6336.1.S1_at--581--6011Chr09:11786165..11786189 (25 bp)
GAGAGCACGGATCACGCATCAAGAA
LOC_Os09g19690
OsAffx.6336.1.S1_at--281--9691Chr09:11786176..11786200 (25 bp)
TCACGCATCAAGAAATCCACAAGGG
LOC_Os09g19690
OsAffx.6336.1.S1_at--118--591Chr09:11786190..11786214 (25 bp)
ATCCACAAGGGCATATGATGCGCAT
LOC_Os09g19690
OsAffx.6336.1.S1_at--832--691Chr09:11786204..11786228 (25 bp)
ATGATGCGCATGAAGAAGTCCACGA
LOC_Os09g19690
OsAffx.6336.1.S1_at--417--1451Chr09:11786217..11786241 (25 bp)
AGAAGTCCACGAGCGCATGGACCGC
LOC_Os09g19690
Target Sequence 
AACATGCGCCAGAGCCGGTCGGTGCGCGGGACTGAGACGATGGGCGTGCCGATGAGGCGGAGCTCGGCGGGGGTGCACTC
CTCACCGCCGAAGAATGGCTGGATCACGCATGAAGAAATCCACGAGAGCACGGATCACGCATCAAGAAATCCACAAGGGC
ATATGATGCGCATGAAGAAGTCCACGAGCGCATGGACCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6336.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis