Browse Element(s) Details


OsAffx.6342.1.S1_at

Description tigr:9637.m01735
TID=OsAffx.6342.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g203609/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20330OsAffx.17797.1.S1_at11/119+12195140..12196682Annexin family protein
LOC_Os09g20340OsAffx.6341.1.S1_at11/119+12202635..12207342hypothetical protein
LOC_Os09g20350Os.11944.1.S1_at11/119+12215432..12217337AP2 domain containing protein, expressed
LOC_Os09g20350Os.11944.1.S2_s_at11/119+12215432..12217337AP2 domain containing protein, expressed
LOC_Os09g20360OsAffx.6342.1.S1_at9/119+12219214..12221523hypothetical protein
LOC_Os09g20370OsAffx.6343.1.S1_at11/119+12227336..12228583hypothetical protein
LOC_Os09g20380NANA9+12239307..12242725transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6342.1.S1_at--396--5351NONE
GAAGAGGAGGCGGAATCAACGTTTT
NONE
OsAffx.6342.1.S1_at--679--371Chr09:12220102..12220126 (25 bp)
ATCAACGTTTTTTCTCGGTGCAAAG
LOC_Os09g20360
OsAffx.6342.1.S1_at--349--7331Chr09:12220424..12220687 (25 bp)
GTGCAAAGGCACACCAGCCACTGGA
LOC_Os09g20360
OsAffx.6342.1.S1_at--466--3371Chr09:12220674..12220698 (25 bp)
CACCAGCCACTGGACAAGGAGGTAG
LOC_Os09g20360
OsAffx.6342.1.S1_at--725--3211Chr09:12220688..12220712 (25 bp)
CAAGGAGGTAGGGTCGGCCTCATCT
LOC_Os09g20360
OsAffx.6342.1.S1_at--288--10071Chr09:12220696..12220720 (25 bp)
TAGGGTCGGCCTCATCTGCAACTGA
LOC_Os09g20360
OsAffx.6342.1.S1_at--593--471Chr09:12220709..12220733 (25 bp)
ATCTGCAACTGATCACCGGTCACCA
LOC_Os09g20360
OsAffx.6342.1.S1_at--587--3371NONE
CACCACCACCGTTGGGTGACATTAA
NONE
OsAffx.6342.1.S1_at--544--2471Chr09:12221275..12221299 (25 bp)
AACACTATAGTCTGCTATCGCTCGT
LOC_Os09g20360
OsAffx.6342.1.S1_at--1061--7651Chr09:12221428..12221452 (25 bp)
GGGATGCTCGACAGCGGAACCCATT
LOC_Os09g20360
OsAffx.6342.1.S1_at--128--5651Chr09:12221437..12221461 (25 bp)
GACAGCGGAACCCATTGCGGCGCCA
LOC_Os09g20360
Target Sequence 
GAAGAGGAGGCGGAATCAACGTTTTTTCTCGGTGCAAAGGCACACCAGCCACTGGACAAGGAGGTAGGGTCGGCCTCATC
TGCAACTGATCACCGGTCACCACCACCGTTGGGTGACATTAACACTATAGTCTGCTATCGCTCGTCACCGTCGTTGCCAC
AGAGGCCCCGCAGCTCATACTCATCGTCGTCGCCCTGCCCCCATGCCTTCACCACCTCCACCGTTGCCCCTTCTCACCCC
GGTAGCAGCGGCAGCGTGGATCCGCCTGTCACGGGGATGCTCGACAGCGGAACCCATTGCGGCGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6342.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis