Browse Element(s) Details


OsAffx.6399.1.S1_at

Description tigr:9637.m02227
TID=OsAffx.6399.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2571011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25640Os.49473.1.S1_at11/119+15399723..154054135' nucleotidase family protein, putative, expressed
LOC_Os09g25650OsAffx.17894.1.S1_at11/119+15407553..15414547GEX2, putative, expressed
LOC_Os09g25660NANA9+15415087..15416486transposon protein, putative, Pong sub-class
LOC_Os09g25670NANA9+15417299..15418558transposon protein, putative, Pong sub-class
LOC_Os09g25679NANA9+15418768..15419206NA
LOC_Os09g25690OsAffx.6397.1.S1_at11/119+15419769..15420566hypothetical protein
LOC_Os09g25700OsAffx.6398.1.S1_at11/119+15421387..15423389hypothetical protein
LOC_Os09g25710OsAffx.6399.1.S1_at11/119+15425337..15425864expressed protein
LOC_Os09g25720OsAffx.17895.1.S1_s_at11/119+15429675..15430148expressed protein
LOC_Os09g25720OsAffx.17895.1.S1_at11/119+15429675..15430148expressed protein
LOC_Os09g25730NANA9+15430738..15432537transposon protein, putative, unclassified
LOC_Os09g25740OsAffx.30020.1.A1_at11/119+15437140..15439298expressed protein
LOC_Os09g25740Os.52395.1.S1_x_at11/119+15437140..15439298expressed protein
LOC_Os09g25740Os.52395.1.S1_at11/119+15437140..15439298expressed protein
LOC_Os09g25760Os.6961.1.S1_a_at11/119+15443235..15445530senescence-associated protein DH, putative, expressed
LOC_Os09g25770Os.49485.1.S1_at10/119+15446684..15448981Integral membrane protein DUF6 containing protein, expressed
LOC_Os09g25784Os.54575.1.S1_at11/119+15449530..15455011Integral membrane protein DUF6 containing protein, expressed
LOC_Os09g25784Os.52700.1.S1_at11/119+15449530..15455011Integral membrane protein DUF6 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6399.1.S1_at--284--3811Chr09:15425385..15425409 (25 bp)
CTCCTGTGCGTGATGTCCGGTGGCT
LOC_Os09g25710
OsAffx.6399.1.S1_at--402--8551Chr09:15425413..15425437 (25 bp)
TGGAGAGCCGCCGTGTGGCGAGGAT
LOC_Os09g25710
OsAffx.6399.1.S1_at--65--9371Chr09:15425443..15425467 (25 bp)
TCGACATCGGCTTGGGTAGCGGGCA
LOC_Os09g25710
OsAffx.6399.1.S1_at--159--8651Chr09:15425474..15425498 (25 bp)
TGGGCTAGGGATTGGACTTGGGCTT
LOC_Os09g25710
OsAffx.6399.1.S1_at--454--6991Chr09:15425512..15425536 (25 bp)
GTACGGGAGGTGTCTCTGCTTCTGG
LOC_Os09g25710
OsAffx.6399.1.S1_at--57--7191Chr09:15425537..15425561 (25 bp)
GTCTGGGTCAGGTTCCGGCTCGGTG
LOC_Os09g25710
OsAffx.6399.1.S1_at--631--3891Chr09:15425569..15425593 (25 bp)
CTGGGTCTACCTCCGGGTCAAGATC
LOC_Os09g25710
OsAffx.6399.1.S1_at--1111--7071Chr09:15425585..15425609 (25 bp)
GTCAAGATCTGGGTCGGTCTCGATT
LOC_Os09g25710
OsAffx.6399.1.S1_at--1157--10551Chr09:15425621..15425645 (25 bp)
TTCTTCTGCTGGGTCGAGTGCCGGA
LOC_Os09g25710
OsAffx.6399.1.S1_at--79--3971Chr09:15425642..15425662 (21 bp)
CGGATCGTATGCTGGGTCAGGATCT
LOC_Os09g25710
OsAffx.6399.1.S1_at--245--7171Chr09:15425792..15425816 (25 bp)
GTCGGGTAATGGATCAGGTTTAGAA
LOC_Os09g25710
Target Sequence 
CTCCTGTGCGTGATGTCCGGTGGCTGCGTGGAGAGCCGCCGTGTGGCGAGGATGGGCCTCGACATCGGCTTGGGTAGCGG
GCAGGGTATTGGGCTAGGGATTGGACTTGGGCTTGGGGTCAGAGCGGGTACGGGAGGTGTCTCTGCTTCTGGGTCTGGGT
CAGGTTCCGGCTCGGTGGCTGGGGCTGGGTCTACCTCCGGGTCAAGATCTGGGTCGGTCTCGATTGGAGGGGCTAGTTCT
TCTGCTGGGTCGAGTGCCGGATCGTATGCTGGGTCAGGATCTGGGTATGGTGAGGGTGGAGGATATGGGCGTGGGTCGGG
TAATGGATCAGGTTTAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6399.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis