Browse Element(s) Details


OsAffx.6411.1.S1_at

Description tigr:9637.m02357
TID=OsAffx.6411.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AF241647 mutant flavonoid 3hydroxylase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2695011/11cytochrome P450 monooxygenase CYP92A1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26920OsAffx.30049.1.S1_at11/119+16355736..16358508subtilase family protein, putative, expressed
LOC_Os09g26920OsAffx.30049.1.S1_x_at11/119+16355736..16358508subtilase family protein, putative, expressed
LOC_Os09g26930OsAffx.30050.1.S1_at11/119+16359213..16359760hypothetical protein
LOC_Os09g26940Os.55146.1.S1_at11/119+16360335..16362288Cytochrome P450 family protein, expressed
LOC_Os09g26950OsAffx.6411.1.S1_at11/119+16375962..16376279cytochrome P450 monooxygenase CYP92A1, putative
LOC_Os09g26960Os.46776.1.S1_s_at11/119+16386751..16389390Cytochrome P450 family protein, expressed
LOC_Os09g26970OsAffx.24503.1.S1_x_at1/119+16391869..16400321retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os09g26970Os.54855.1.S1_at1/119+16391869..16400321retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os09g26970OsAffx.20809.1.S1_at1/119+16391869..16400321retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0009813biological_processflavonoid biosynthesis
GO:0016711molecular_functionflavonoid 3'-monooxygenase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6411.1.S1_at--874--7131Chr09:16376225..16376249 (25 bp)
GTCATTGTGCTCACAGCAGTCGTCT
LOC_Os09g26950
OsAffx.6411.1.S1_at--620--9591Chr09:16376224..16376248 (25 bp)
TCATTGTGCTCACAGCAGTCGTCTT
LOC_Os09g26950
OsAffx.6411.1.S1_at--684--31Chr09:16376222..16376246 (25 bp)
ATTGTGCTCACAGCAGTCGTCTTCT
LOC_Os09g26950
OsAffx.6411.1.S1_at--616--4091Chr09:16376171..16376195 (25 bp)
CGACGCGTGTATAGGCTCCCGCTAG
LOC_Os09g26950
OsAffx.6411.1.S1_at--103--5811Chr09:16376170..16376194 (25 bp)
GACGCGTGTATAGGCTCCCGCTAGG
LOC_Os09g26950
OsAffx.6411.1.S1_at--780--3991Chr09:16376166..16376190 (25 bp)
CGTGTATAGGCTCCCGCTAGGGCCA
LOC_Os09g26950
OsAffx.6411.1.S1_at--408--8771Chr09:16376164..16376188 (25 bp)
TGTATAGGCTCCCGCTAGGGCCAAA
LOC_Os09g26950
OsAffx.6411.1.S1_at--208--131Chr09:16376051..16376075 (25 bp)
ATTCAGCTCCGGTTCGGATCATGCA
LOC_Os09g26950
OsAffx.6411.1.S1_at--821--9651Chr09:16376049..16376073 (25 bp)
TCAGCTCCGGTTCGGATCATGCAGG
LOC_Os09g26950
OsAffx.6411.1.S1_at--22--1591Chr09:16376047..16376071 (25 bp)
AGCTCCGGTTCGGATCATGCAGGGA
LOC_Os09g26950
OsAffx.6411.1.S1_at--1109--4251Chr09:16376043..16376067 (25 bp)
CCGGTTCGGATCATGCAGGGAGGAG
LOC_Os09g26950
Target Sequence 
GTCATTGTGCTCACAGCAGTCGTCTTCTTCCTCGCCACCATTCTCTGCCATGGCCGACGCGTGTATAGGCTCCCGCTAGG
GCCAAAGCCATGGCCGATCATCGGCAACCTCAACCTCATTGGCGCGCTGCCACACCGCTCCATCCACGAGCTCTCCAAGC
GCTACGGCCCGCTCATTCAGCTCCGGTTCGGATCATGCAGGGAGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6411.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis