Browse Element(s) Details


OsAffx.6415.1.S1_at

Description tigr:9637.m02407
TID=OsAffx.6415.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2743011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27370Os.7318.1.A1_at11/119+16632329..16635433Spc97/Spc98 family protein, expressed
LOC_Os09g27370Os.7318.2.S1_at11/119+16632329..16635433Spc97/Spc98 family protein, expressed
LOC_Os09g27380OsAffx.30055.1.S1_at11/119+16639056..16639825Zinc finger, C3HC4 type family protein
LOC_Os09g27390OsAffx.30056.1.S1_at11/119+16643542..16646280transposon protein, putative, unclassified
LOC_Os09g27400OsAffx.30057.1.S1_at10/119+16647821..16649401expressed protein
LOC_Os09g27410NANA9+16652112..16652372hypothetical protein
LOC_Os09g27420Os.14842.1.S1_at11/119+16653815..16657634Formate-tetrahydrofolate ligase, putative, expressed
LOC_Os09g27430OsAffx.6415.1.S1_at11/119+16658578..16659351hypothetical protein
LOC_Os09g27440OsAffx.17932.1.S1_at11/119+16659907..16660425hypothetical protein
LOC_Os09g27450OsAffx.17933.1.S1_at11/119+16673597..16675209Homeobox associated leucine zipper family protein, expressed
LOC_Os09g27450Os.49759.1.S1_x_at10/119+16673597..16675209Homeobox associated leucine zipper family protein, expressed
LOC_Os09g27460NANA9+16680045..16680362retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g27470NANA9+16681896..16684189retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6415.1.S1_at--872--4651Chr09:16659032..16659056 (25 bp)
GCGTGCTGGCGATACTGGACATGAT
LOC_Os09g27430
OsAffx.6415.1.S1_at--208--6491Chr09:16659042..16659066 (25 bp)
GATACTGGACATGATCGTGGCCCGC
LOC_Os09g27430
OsAffx.6415.1.S1_at--411--8531Chr09:16659047..16659071 (25 bp)
TGGACATGATCGTGGCCCGCCTCGG
LOC_Os09g27430
OsAffx.6415.1.S1_at--949--7551Chr09:16659130..16659154 (25 bp)
GGGCCCAAGGTGGATGAGATCCTCC
LOC_Os09g27430
OsAffx.6415.1.S1_at--1158--4371Chr09:16659134..16659158 (25 bp)
CCAAGGTGGATGAGATCCTCCGGGT
LOC_Os09g27430
OsAffx.6415.1.S1_at--1099--1271Chr09:16659146..16659170 (25 bp)
AGATCCTCCGGGTGCGCAACGCGCT
LOC_Os09g27430
OsAffx.6415.1.S1_at--619--9151Chr09:16659158..16659182 (25 bp)
TGCGCAACGCGCTGGATGAGATCAG
LOC_Os09g27430
OsAffx.6415.1.S1_at--744--1271Chr09:16659176..16659200 (25 bp)
AGATCAGGAGCGAGATGGACCTCCC
LOC_Os09g27430
OsAffx.6415.1.S1_at--1026--4571Chr09:16659202..16659226 (25 bp)
GCGCTGATGCGGAGGCTTCTCCACA
LOC_Os09g27430
OsAffx.6415.1.S1_at--917--9131Chr09:16659209..16659233 (25 bp)
TGCGGAGGCTTCTCCACAAGCGGCG
LOC_Os09g27430
OsAffx.6415.1.S1_at--7--971Chr09:16659296..16659320 (25 bp)
AGGACCAGGCCGACGAGACAGAGAG
LOC_Os09g27430
Target Sequence 
GCGTGCTGGCGATACTGGACATGATCGTGGCCCGCCTCGGCGCGGCGATCGGGCTGGAGGAGGCGCTGCTCGCCATGGCC
AGGACGAGCAGCTACGAGGGGCCCAAGGTGGATGAGATCCTCCGGGTGCGCAACGCGCTGGATGAGATCAGGAGCGAGAT
GGACCTCCCCGCGCTGATGCGGAGGCTTCTCCACAAGCGGCGGGGTGTCACGGAGATCACCACCTGCCGGCCAGCCGCCG
GCGCCGGCGCCGCCGCGACGGAGCAGGACCAGGCCGACGAGACAGAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6415.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis