Browse Element(s) Details


OsAffx.6430.1.S1_at

Description tigr:9637.m02518
TID=OsAffx.6430.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2854011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28500OsAffx.17948.1.S1_x_at11/119+17331813..17332130EF hand family protein
LOC_Os09g28500OsAffx.17948.1.S1_at11/119+17331813..17332130EF hand family protein
LOC_Os09g28510Os.8862.1.S1_at11/119+17337536..17338144EF hand family protein, expressed
LOC_Os09g28510OsAffx.29608.3.S1_at1/119+17337536..17338144EF hand family protein, expressed
LOC_Os09g28520Os.57006.1.S1_at11/119+17349764..17351412expressed protein
LOC_Os09g28530NANA9+17353470..17353886hypothetical protein
LOC_Os09g28540OsAffx.6430.1.S1_at11/119+17355243..17356377hypothetical protein
LOC_Os09g28550Os.49767.1.S1_x_at9/119+17358273..17359272expressed protein
LOC_Os09g28550Os.49767.1.S1_at8/119+17358273..17359272expressed protein
LOC_Os09g28560Os.49657.1.S1_at11/119+17365406..17370402Protein phosphatase 2C containing protein, expressed
LOC_Os09g28570Os.5201.1.S1_at11/119+17376007..17387956oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os09g28570Os.5201.2.S1_x_at11/119+17376007..17387956oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os09g28570Os.5201.3.S1_at10/119+17376007..17387956oxidoreductase, zinc-binding dehydrogenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6430.1.S1_at--1019--10671Chr09:17356181..17356205 (25 bp)
TTCCAGCCATGCTAGCCCGACGCAA
LOC_Os09g28540
OsAffx.6430.1.S1_at--512--2251Chr09:17355353..17355377 (25 bp)
AAATTTGGGCAAGAATTGGTGTTCA
LOC_Os09g28540
OsAffx.6430.1.S1_at--138--5211Chr09:17355341..17355365 (25 bp)
GAATTGGTGTTCAAAGCCTGGCAGA
LOC_Os09g28540
OsAffx.6430.1.S1_at--238--7751Chr09:17355336..17355360 (25 bp)
GGTGTTCAAAGCCTGGCAGACATTA
LOC_Os09g28540
OsAffx.6430.1.S1_at--539--2651Chr09:17355328..17355352 (25 bp)
AAGCCTGGCAGACATTAGTCCGGTC
LOC_Os09g28540
OsAffx.6430.1.S1_at--871--8491Chr09:17355323..17355347 (25 bp)
TGGCAGACATTAGTCCGGTCACAGT
LOC_Os09g28540
OsAffx.6430.1.S1_at--598--2071Chr09:17355317..17355341 (25 bp)
ACATTAGTCCGGTCACAGTGCAAGC
LOC_Os09g28540
OsAffx.6430.1.S1_at--108--10051Chr09:17355313..17355337 (25 bp)
TAGTCCGGTCACAGTGCAAGCCACT
LOC_Os09g28540
OsAffx.6430.1.S1_at--747--7811Chr09:17355307..17355331 (25 bp)
GGTCACAGTGCAAGCCACTCAAAAG
LOC_Os09g28540
OsAffx.6430.1.S1_at--872--7331Chr09:17355300..17355324 (25 bp)
GTGCAAGCCACTCAAAAGAGTTTCT
LOC_Os09g28540
OsAffx.6430.1.S1_at--451--1691Chr09:17355295..17355319 (25 bp)
AGCCACTCAAAAGAGTTTCTCTAGC
LOC_Os09g28540
Target Sequence 
TTCCAGCCATGCTAGCCCGACGCAAACCCCGCATCGACGAGGCCATGGAGCCGTACGAGTACGAGAAGGGGTGGAAGCCT
GGAAGGGAGAAATTTGGGCAAGAATTGGTGTTCAAAGCCTGGCAGACATTAGTCCGGTCACAGTGCAAGCCACTCAAAAG
AGTTTCTCTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6430.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis