Browse Element(s) Details


OsAffx.6448.1.S1_at

Description tigr:9637.m02690
TID=OsAffx.6448.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g301601/11Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g493501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30140OsAffx.30095.1.S1_at11/119+18330306..18332053expressed protein
LOC_Os09g30140Os.55282.1.S1_x_at11/119+18330306..18332053expressed protein
LOC_Os09g30140Os.55282.1.S1_at11/119+18330306..18332053expressed protein
LOC_Os09g30150Os.9184.1.S1_at11/119+18338633..18342613Protein kinase G11A, putative, expressed
LOC_Os09g30150Os.16381.1.S1_a_at1/119+18338633..18342613Protein kinase G11A, putative, expressed
LOC_Os09g30160Os.7629.1.S1_at3/119+18350993..18351638Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g30160OsAffx.6448.1.S1_at1/119+18350993..18351638Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g30170OsAffx.6449.1.S1_at11/119+18359710..18362282F-box protein interaction domain containing protein, expressed
LOC_Os09g30180Os.23911.1.S1_at10/119+18363591..18367258F-box protein interaction domain containing protein, expressed
LOC_Os09g30190OsAffx.30096.1.S1_x_at11/119+18374695..18378226protein kinase family protein, putative, expressed
LOC_Os09g30190Os.56726.1.S1_x_at10/119+18374695..18378226protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0031225cellular_componentanchored to membrane
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6448.1.S1_at--47--311Chr09:18351435..18351459 (25 bp)
ATAGCCTCGTGCTGTACGTGCTGTA
LOC_Os09g30160
OsAffx.6448.1.S1_at--248--4251NONE
CCTGGCGGACACATTAAGGGTGGTT
NONE
OsAffx.6448.1.S1_at--951--5576Chr10:14622078..14622097 (20 bp)
GACACATTAAGGGTGGTTATGCCTT
NONE
OsAffx.6448.1.S1_at--600--6011Chr09:18348138..18348555 (25 bp)
GAGAGTATCAGGTTGCTTGGCGTTA
NONE
OsAffx.6448.1.S1_at--304--1016Chr06:20711632..20711652 (21 bp)
AGGTTGCTTGGCGTTATATTAATAG
NONE
OsAffx.6448.1.S1_at--54--10032Chr02:22533881..22533905 (25 bp)
TAGAAGGAGATTAAGTACACAGCAA
NONE
OsAffx.6448.1.S1_at--520--2993Chr03:25521499..25521523 (25 bp)
AATGAAAAACTGTACATTGCTGACT
NONE
OsAffx.6448.1.S1_at--1151--3592Chr02:22533932..22534006 (25 bp)
CATTGCTGACTGCAAACATGTTTGC
NONE
OsAffx.6448.1.S1_at--570--3511Chr09:18348040..18348064 (25 bp)
CATGTTTGCACATCAGTCCACCTTG
NONE
OsAffx.6448.1.S1_at--780--1735Chr05:16932968..16933081 (24 bp)
ACCTTGCACCTCATGGCAACAATCT
NONE
OsAffx.6448.1.S1_at--856--3494Chr03:25521559..25521583 (25 bp)
CATGGCAACAATCTCGCAACGTGCT
NONE
Target Sequence 
ATAGCCTCGTGCTGTACGTGCTGTACAACGCGGTGGTGTCGGTGGCGGCGCTGGCCGGCGTGGTGCGGGCGGCGCTGGTG
TTCCTGGGGCTCCCCACGCCGCCGTCGCTGCTGCTGCTGCTCGGCGGCGAGGAAGGGGGGGAGGACGCGGCCGTGGCCGT
GTCGGTCTCCGCGGCGGCGGCGGCGGCGGGGCCCAGCCTGGCGGACACATTAAGGGTGGTTATGCCTTATATTTTGGAAT
GGAGAGAGTATCAGGTTGCTTGGCGTTATATTAATAGAAGGAGATTAAGTACACAGCAAAAACTGAAGAAAAATGAAAAA
CTGTACATTGCTGACTGCAAACATGTTTGCACATCAGTCCACCTTGCACCTCATGGCAACAATCTCGCAACGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6448.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis