Browse Element(s) Details


OsAffx.6499.1.S1_x_at

Description tigr:9637.m03126
TID=OsAffx.6499.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3697011/11hypothetical protein
LOC_Os09g025801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36920OsAffx.18018.1.S1_s_at11/119+21299441..21303732La domain containing protein, expressed
LOC_Os09g36930Os.14256.1.S1_a_at11/119+21309651..21311060aquaporin PIP2.8, putative, expressed
LOC_Os09g36940OsAffx.18019.1.S1_at11/119+21312642..21313340Plastocyanin-like domain containing protein, expressed
LOC_Os09g36950OsAffx.18020.1.S1_at11/119+21315300..21315704hypothetical protein
LOC_Os09g36960NANA9+21320178..21320582hypothetical protein
LOC_Os09g36970OsAffx.6499.1.S1_at11/119+21327366..21327821hypothetical protein
LOC_Os09g36970OsAffx.6499.1.S1_x_at11/119+21327366..21327821hypothetical protein
LOC_Os09g36976Os.24767.1.S1_at11/119+21330266..21332247expressed protein
LOC_Os09g36976OsAffx.30161.1.S1_s_at11/119+21330266..21332247expressed protein
LOC_Os09g36982Os.51421.1.S1_at10/119+21332768..21334610expressed protein
LOC_Os09g36990Os.10051.1.S1_at11/119+21336091..21338012expressed protein
LOC_Os09g37000Os.15703.1.S1_at11/119+21338282..2134172726S proteasome non-ATPase regulatory subunit 3, putative, expressed
LOC_Os09g37006Os.9612.1.S1_at11/119+21343056..21346171expressed protein
LOC_Os09g37012Os.27784.1.S1_at11/119+21346754..21350396Eukaryotic aspartyl protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6499.1.S1_x_at--597--3991Chr09:21327547..21327571 (25 bp)
CGTGTGAGCTCTTCGCGGCCAAGCG
LOC_Os09g36970
OsAffx.6499.1.S1_x_at--443--2672Chr09:21327567..21327591 (25 bp)
AAGCGACTTGTTCTCTTGAGCGGGA
LOC_Os09g36970
OsAffx.6499.1.S1_x_at--372--8631Chr09:21327608..21327632 (25 bp)
TGGTGGCTCCCGATCTGCCATCTTT
LOC_Os09g36970
OsAffx.6499.1.S1_x_at--407--4051Chr09:21327618..21327642 (25 bp)
CGATCTGCCATCTTTGCATCCTCGG
LOC_Os09g36970
OsAffx.6499.1.S1_x_at--1155--8711Chr09:21327650..21327674 (25 bp)
TGTAAACGCCCCACCTGTGATAGCG
LOC_Os09g36970
OsAffx.6499.1.S1_x_at--497--2371Chr09:21327653..21327677 (25 bp)
AAACGCCCCACCTGTGATAGCGCAG
LOC_Os09g36970
OsAffx.6499.1.S1_x_at--325--8631Chr09:21327665..21327689 (25 bp)
TGTGATAGCGCAGGTCATGCCCCGT
LOC_Os09g36970
OsAffx.6499.1.S1_x_at--39--311Chr09:21327669..21327693 (25 bp)
ATAGCGCAGGTCATGCCCCGTCCTT
LOC_Os09g36970
OsAffx.6499.1.S1_x_at--716--9551Chr09:21327679..21327703 (25 bp)
TCATGCCCCGTCCTTCCGAGGATTA
LOC_Os09g36970
OsAffx.6499.1.S1_x_at--781--7771Chr09:21327740..21327764 (25 bp)
GGTGCCTGGGATTCCGCGGAGGACG
LOC_Os09g36970
OsAffx.6499.1.S1_x_at--1119--6571Chr09:21327749..21327773 (25 bp)
GATTCCGCGGAGGACGCGGCTCTAC
LOC_Os09g36970
Target Sequence 
CGTGTGAGCTCTTCGCGGCCAAGCGACTTGTTCTCTTGAGCGGGAGCAACAAGTCGTCCTCTGGTGGCTCCCGATCTGCC
ATCTTTGCATCCTCGGGCTCCTCTGTAAACGCCCCACCTGTGATAGCGCAGGTCATGCCCCGTCCTTCCGAGGATTACCT
CAGCGATGAGGAGCTAGAAGATGATTCCCAGGAGGTGCCTGGGATTCCGCGGAGGACGCGGCTCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6499.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis