Browse Element(s) Details


OsAffx.6537.1.S1_at

Description tigr:9638.m00005
TID=OsAffx.6537.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0103011/11hypothetical protein
LOC_Os06g220402/11hypothetical protein
LOC_Os07g102701/11hypothetical protein
LOC_Os10g023141/11hypothetical protein
LOC_Os06g345641/11Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os04g213301/11hypothetical protein
LOC_Os02g477001/11hypothetical protein
LOC_Os05g207701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g677601/11hypothetical protein
LOC_Os02g154201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01010OsAffx.8589.1.S1_at3/1110+6385..6747transposon protein, putative, Ac/Ds sub-class
LOC_Os10g01020OsAffx.5954.4.S1_x_at11/1110+12860..20923retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01020OsAffx.5954.1.S1_x_at7/1110+12860..20923retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01020OsAffx.5954.5.S1_x_at4/1110+12860..20923retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01020OsAffx.5954.3.S1_x_at4/1110+12860..20923retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01020OsAffx.5954.2.S1_at1/1110+12860..20923retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01030OsAffx.6537.1.S1_at11/1110+22819..24231hypothetical protein
LOC_Os10g01030OsAffx.20927.1.S1_x_at1/1110+22819..24231hypothetical protein
LOC_Os10g01044Os.17906.1.S1_at10/1110+30118..42506Tic62 protein, putative, expressed
LOC_Os10g01044OsAffx.6538.1.S1_x_at7/1110+30118..42506Tic62 protein, putative, expressed
LOC_Os10g01044OsAffx.6538.1.S1_at1/1110+30118..42506Tic62 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6537.1.S1_at--190--2791Chr10:24083..24107 (25 bp)
AAGAGGCTATTCTCGCAGTTCACGA
LOC_Os10g01030
OsAffx.6537.1.S1_at--404--6151Chr10:24016..24040 (25 bp)
GAGGTACCACTACGATTGGTCTTCA
LOC_Os10g01030
OsAffx.6537.1.S1_at--448--3052Chr10:23992..24016 (25 bp)
AATCGACAACGTAGCGATCCTCGTA
LOC_Os10g01030
OsAffx.6537.1.S1_at--73--2052Chr10:23962..23986 (25 bp)
ACTTCCACTGGTTGAGGTACGACTA
LOC_Os10g01030
OsAffx.6537.1.S1_at--868--5692Chr06:12772559..12772583 (25 bp)
GACTACGACTGGTTTTCAGCCAGCA
LOC_Os06g22040
OsAffx.6537.1.S1_at--379--10311Chr10:23929..23953 (25 bp)
TTTCAGCCAGCAACGTAGCAATCCT
LOC_Os10g01030
OsAffx.6537.1.S1_at--1042--8123Chr12:2673698..2673808 (25 bp)
ATGGTCGAGGTCGTAGTGATCTCTC
NONE
OsAffx.6537.1.S1_at--245--111Chr10:23637..23661 (25 bp)
ATTCTGCCACTACCTATGCGATTTG
LOC_Os10g01030
OsAffx.6537.1.S1_at--1119--9391Chr10:23571..23595 (25 bp)
TCGTCTGATCATCTACGTCAAATTT
LOC_Os10g01030
OsAffx.6537.1.S1_at--955--4315Chr09:1569381..1569423 (25 bp)
CCACGATAACACCTATTGACCCTTT
NONE
OsAffx.6537.1.S1_at--990--5951Chr10:23446..23470 (25 bp)
GAGAATTTCAGCTAGGGACGCCCAT
LOC_Os10g01030
Target Sequence 
AAGAGGCTATTCTCGCAGTTCACGAGAATGTCGTCCATATATTACTCTGGATTCCTTACAAATGGTCGAGGTACCACTAC
GATTGGTCTTCAATCGACAACGTAGCGATCCTCGTACCACAACTTCCACTGGTTGAGGTACGACTACGACTGGTTTTCAG
CCAGCAACGTAGCAATCCTCGCACCACGACTTCTAATGGTCGAGGTCGTAGTGATCTCTCATACCTCCACTTCAAGTGGT
CGAGTTATGACTACAACTGGTCTTCTGCCAGCGATGTAGCGATTCTGCCACTACCTATGCGATTTGTTGTGCACAACTAT
ACAGTTGGTCTTTGCCCAGTGTGGTGGTCGTCTGATCATCTACGTCAAATTTATAGATCCATTACCACGATAACACCTAT
TGACCCTTTACGCCGTTCCGACAAGCCTCCAAGAGACCTACGAGAATTTCAGCTAGGGACGCCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6537.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis