Browse Element(s) Details


OsAffx.6598.1.S1_at

Description tigr:9638.m00619
TID=OsAffx.6598.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0703011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g07010OsAffx.20724.2.S1_s_at11/1110+3642678..3645618senescence-associated protein 15, putative
LOC_Os10g07010OsAffx.20724.1.S1_at10/1110+3642678..3645618senescence-associated protein 15, putative
LOC_Os10g07030OsAffx.6598.1.S1_at11/1110+3667978..3669950hypothetical protein
LOC_Os10g07040OsAffx.18163.1.S1_at11/1110+3680945..3682922Chalcone synthase 8, putative
LOC_Os10g07050OsAffx.20723.1.S1_x_at11/1110+3685751..3687513hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6598.1.S1_at--353--6091Chr10:3669712..3669736 (25 bp)
GAGTACTTATCGTCATTGGTGCCAG
LOC_Os10g07030
OsAffx.6598.1.S1_at--494--6231Chr10:3669675..3669699 (25 bp)
GATGGCCGCCACACATGGTCTTGGG
LOC_Os10g07030
OsAffx.6598.1.S1_at--453--10811Chr10:3669569..3669593 (25 bp)
TTGTCGTTCTCGCATAGTATCTGGC
LOC_Os10g07030
OsAffx.6598.1.S1_at--775--8471Chr10:3669548..3669572 (25 bp)
TGGCGAGAACGAGGCCGGATCCACA
LOC_Os10g07030
OsAffx.6598.1.S1_at--731--7971Chr10:3669532..3669556 (25 bp)
GGATCCACACCTATAGCGGTGGTGG
LOC_Os10g07030
OsAffx.6598.1.S1_at--176--5911Chr10:3669477..3669501 (25 bp)
GAGCTCGACGCTGCTTATCTTGTCG
LOC_Os10g07030
OsAffx.6598.1.S1_at--390--7351Chr10:3668177..3668201 (25 bp)
GTGCAAGGCGTGACTACTCAATATT
LOC_Os10g07030
OsAffx.6598.1.S1_at--813--2112Chr12:7844295..7844319 (25 bp)
ACATGTCGACTGGTGGAGGCGTCAA
NONE
OsAffx.6598.1.S1_at--11--1931Chr10:3668102..3668126 (25 bp)
ACGGTGAACATGTTGGCAGCGGTAT
LOC_Os10g07030
OsAffx.6598.1.S1_at--703--3271Chr10:3668031..3668055 (25 bp)
CAACAATGTCTTATCCTCAGGAGTG
LOC_Os10g07030
OsAffx.6598.1.S1_at--141--7432Chr07:6997101..6997121 (21 bp)
GTGTTCTCTGGGTATATTACTCTAT
NONE
Target Sequence 
GAGTACTTATCGTCATTGGTGCCAGATCTGCGCTCCCGATGGCCGCCACACATGGTCTTGGGCACCGCCGACGACCGGTT
CACAGTGGCCTCCTGCTCCTCGCGGTCACTAACACCGTCGAGGTCGTCGTCTCCTCCTTGCCCTTGTCGTTCTCGCATAG
TATCTGGCGAGAACGAGGCCGGATCCACACCTATAGCGGTGGTGGAGGCTCGATCTCGCTGGTGGAGAGGGGAGAGAGCT
CGACGCTGCTTATCTTGTCGCCCTCACTGTGGACGAACCGCCGCCGCCACCCGCCGGTCGTCTCCCCTCCACCTAGATCT
GAGCCTCCCATCGTGGCACAGTTTTTGGGGAGTGCAAGGCGTGACTACTCAATATTCGTCAACGTCTACTTCATCTTCAT
CAACATGTCGACTGGTGGAGGCGTCAACGGTGAACATGTTGGCAGCGGTATTGGAGGAGACGAGAATGACAACACCAACA
GAGGCAACAACAACAAACAACAATGTCTTATCCTCAGGAGTGTTCTCTGGGTATATTACTCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6598.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis