Browse Element(s) Details


OsAffx.20724.2.S1_s_at

Description tigr:9638.m00617
TID=OsAffx.20724.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Chalcone and stilbene synthases, C-terminal domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0701011/11senescence-associated protein 15, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06980Os.26886.3.S1_x_at4/1110+3619701..3621043transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g06990Os.26886.1.S1_x_at4/1110+3621224..3624918transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g07000Os.26886.2.S1_s_at5/1110+3625219..3625891hypothetical protein
LOC_Os10g07000Os.26886.6.S1_s_at4/1110+3625219..3625891hypothetical protein
LOC_Os10g07010OsAffx.20724.2.S1_s_at11/1110+3642678..3645618senescence-associated protein 15, putative
LOC_Os10g07010OsAffx.20724.1.S1_at10/1110+3642678..3645618senescence-associated protein 15, putative
LOC_Os10g07030OsAffx.6598.1.S1_at11/1110+3667978..3669950hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000038biological_processvery-long-chain fatty acid metabolism
GO:0010025biological_processwax biosynthesis
GO:0030497biological_processfatty acid elongation
GO:0042335biological_processcuticle biosynthesis
GO:0016020cellular_componentmembrane
GO:0008415molecular_functionacyltransferase activity
GO:0009922molecular_functionfatty acid elongase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20724.2.S1_s_at--836--4191Chr10:3644014..3644038 (25 bp)
CCCGCCAAAAGCATACATTTGATGA
LOC_Os10g07010
OsAffx.20724.2.S1_s_at--280--6431Chr10:3643991..3644015 (25 bp)
GATCTTTTGTGATTGCTGTCGTTCA
LOC_Os10g07010
OsAffx.20724.2.S1_s_at--544--9111Chr10:3643978..3644002 (25 bp)
TGCTGTCGTTCAGTTGCAATCCACG
LOC_Os10g07010
OsAffx.20724.2.S1_s_at--435--6751Chr10:3643971..3643995 (25 bp)
GTTCAGTTGCAATCCACGAGATTTG
LOC_Os10g07010
OsAffx.20724.2.S1_s_at--449--1871Chr10:3643956..3643980 (25 bp)
ACGAGATTTGCATGATGACTATACA
LOC_Os10g07010
OsAffx.20724.2.S1_s_at--303--8951Chr10:3643941..3643965 (25 bp)
TGACTATACACGTACCCAGCAGAAC
LOC_Os10g07010
OsAffx.20724.2.S1_s_at--131--3411Chr10:3643925..3643949 (25 bp)
CAGCAGAACGCTACACTAATTATTA
LOC_Os10g07010
OsAffx.20724.2.S1_s_at--405--151Chr10:3643904..3643928 (25 bp)
ATTAGACTTGCTCAACTAGTGTGTT
LOC_Os10g07010
OsAffx.20724.2.S1_s_at--776--3871Chr10:3643869..3643893 (25 bp)
CTGTTAATCAATTTGTCTTTCAGAT
LOC_Os10g07010
OsAffx.20724.2.S1_s_at--641--7151Chr10:3643855..3643879 (25 bp)
GTCTTTCAGATTATAGGGCCACAGT
LOC_Os10g07010
OsAffx.20724.2.S1_s_at--635--10071Chr10:3643842..3643866 (25 bp)
TAGGGCCACAGTTTGAAATTTAAAT
LOC_Os10g07010
Target Sequence 
CCCGCCAAAAGCATACATTTGATGATCTTTTGTGATTGCTGTCGTTCAGTTGCAATCCACGAGATTTGCATGATGACTAT
ACACGTACCCAGCAGAACGCTACACTAATTATTAGACTTGCTCAACTAGTGTGTTGTTAAATATTCTGTTAATCAATTTG
TCTTTCAGATTATAGGGCCACAGTTTGAAATTTAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20724.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis