Browse Element(s) Details


OsAffx.20724.1.S1_at

Description gb:NM_194947.1
DB_XREF= gi:37531253
TID=OsAffx.20724.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative senescence-associated protein 15 (OSJNBa0036D19.6), mRNA.
PROD=putative senescence-associated protein 15
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0701010/11senescence-associated protein 15, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06980Os.26886.3.S1_x_at4/1110+3619701..3621043transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g06990Os.26886.1.S1_x_at4/1110+3621224..3624918transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g07000Os.26886.2.S1_s_at5/1110+3625219..3625891hypothetical protein
LOC_Os10g07000Os.26886.6.S1_s_at4/1110+3625219..3625891hypothetical protein
LOC_Os10g07010OsAffx.20724.2.S1_s_at11/1110+3642678..3645618senescence-associated protein 15, putative
LOC_Os10g07010OsAffx.20724.1.S1_at10/1110+3642678..3645618senescence-associated protein 15, putative
LOC_Os10g07030OsAffx.6598.1.S1_at11/1110+3667978..3669950hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000038biological_processvery-long-chain fatty acid metabolism
GO:0010025biological_processwax biosynthesis
GO:0030497biological_processfatty acid elongation
GO:0042335biological_processcuticle biosynthesis
GO:0016020cellular_componentmembrane
GO:0008415molecular_functionacyltransferase activity
GO:0009922molecular_functionfatty acid elongase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20724.1.S1_at--264--4571NONE
GCGCCGCCGCGTAATTGTTATTGTC
NONE
OsAffx.20724.1.S1_at--468--4211Chr10:3643233..3643253 (21 bp)
CCGCGTAATTGTTATTGTCGCTATT
LOC_Os10g07010
OsAffx.20724.1.S1_at--84--10751Chr10:3643219..3643243 (25 bp)
TTGTCGCTATTATACGACTTTTCGA
LOC_Os10g07010
OsAffx.20724.1.S1_at--798--951Chr10:3643193..3643216 (24 bp)
AGGACCAATTGACTCTTCGGAACCA
LOC_Os10g07010
OsAffx.20724.1.S1_at--789--8931Chr10:3643075..3643207 (25 bp)
TGACTCTTCGGAACCAATTTGGCTT
LOC_Os10g07010
OsAffx.20724.1.S1_at--644--10871Chr10:3643057..3643081 (25 bp)
TTGGCTTCCATCAAAATCACGTGTA
LOC_Os10g07010
OsAffx.20724.1.S1_at--842--3071Chr10:3643043..3643067 (25 bp)
AATCACGTGTACACCGTTTCTGAAA
LOC_Os10g07010
OsAffx.20724.1.S1_at--329--2691Chr10:3642774..3642798 (25 bp)
AAGCTGTAGAGGACATTTTTTCGAT
LOC_Os10g07010
OsAffx.20724.1.S1_at--1007--10351Chr10:3642758..3642782 (25 bp)
TTTTTCGATGGGATTGTTGTCAACT
LOC_Os10g07010
OsAffx.20724.1.S1_at--995--6571Chr10:3642747..3642771 (25 bp)
GATTGTTGTCAACTTGTTTGGCAAG
LOC_Os10g07010
OsAffx.20724.1.S1_at--973--31Chr10:3642710..3642734 (25 bp)
ATTGGGACATCTAAACGCCTTGCGG
LOC_Os10g07010
Target Sequence 
GCGCCGCCGCGTAATTGTTATTGTCGCTATTATACGACTTTTCGAAAAGGACCAATTGACTCTTCGGAACCAATTTGGCT
TCCATCAAAATCACGTGTACACCGTTTCTGAAAATTTGCAAACTGGGGAGAAAGCACAGTTTGAAAGCTGTAGAGGACAT
TTTTTCGATGGGATTGTTGTCAACTTGTTTGGCAAGAAGACAATCACGATTGGGACATCTAAACGCCTTGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20724.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis