Browse Element(s) Details


OsAffx.673.1.S1_at

Description gb:NM_193641.1
DB_XREF= gi:34914365
GEN=B1168H06.1
TID=OsAffx.673.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative non-LTR retroelement reverse transcriptase (B1168H06.1), mRNA.
PROD=putative non-LTR retroelement reversetranscriptase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3344011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33410Os.52853.1.S1_at11/111+18717069..18720977hAT family dimerisation domain containing protein, expressed
LOC_Os01g33420Os.27578.1.S1_at11/111+18721100..18728532glycosyl hydrolase family protein 27, putative, expressed
LOC_Os01g33430OsAffx.11301.1.S1_at11/111+18732198..18737254Leucine Rich Repeat family protein
LOC_Os01g33440OsAffx.673.1.S1_at11/111+18739470..18742196retrotransposon protein, putative, unclassified
LOC_Os01g33440OsAffx.673.1.S1_x_at11/111+18739470..18742196retrotransposon protein, putative, unclassified
LOC_Os01g33440OsAffx.17708.1.S1_at1/111+18739470..18742196retrotransposon protein, putative, unclassified
LOC_Os01g33450OsAffx.23489.1.S1_at10/111+18743766..18745290expressed protein
LOC_Os01g33460OsAffx.5954.5.S1_x_at6/111+18752291..18757613retrotransposon protein, putative, unclassified
LOC_Os01g33460OsAffx.5954.1.S1_x_at4/111+18752291..18757613retrotransposon protein, putative, unclassified
LOC_Os01g33460OsAffx.5954.3.S1_x_at3/111+18752291..18757613retrotransposon protein, putative, unclassified
LOC_Os01g33470OsAffx.5954.4.S1_x_at2/111+18758807..18760302hypothetical protein
LOC_Os01g33480OsAffx.23491.1.S1_at11/111+18762557..18762961hypothetical protein
LOC_Os01g33490Os.53265.1.S1_at11/111+18765185..18766453F-box domain containing protein, expressed
LOC_Os01g33490OsAffx.8942.1.S1_x_at11/111+18765185..18766453F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.673.1.S1_at--159--3132Chr01:18740712..18740736 (25 bp)
CAATTATCAGAAGAGTGAGGTTTAT
LOC_Os01g33440
OsAffx.673.1.S1_at--1001--8211Chr01:18740763..18740787 (25 bp)
GGAATTGTATGCTGACATGCTTAAT
LOC_Os01g33440
OsAffx.673.1.S1_at--857--6912Chr01:18740769..18740793 (25 bp)
GTATGCTGACATGCTTAATTGTAAA
LOC_Os01g33440
OsAffx.673.1.S1_at--235--10112Chr01:18741443..18741467 (25 bp)
TATGGGTGCCCCTAATTGGGTTTTG
LOC_Os01g33440
OsAffx.673.1.S1_at--826--5752Chr01:18741510..18741534 (25 bp)
GACGTTTTGAAAAGTTTGCTGCAGG
LOC_Os01g33440
OsAffx.673.1.S1_at--1078--7631Chr01:18741717..18741741 (25 bp)
GGGAGAATACCTTGCGCTAAACTCT
LOC_Os01g33440
OsAffx.673.1.S1_at--448--8051Chr01:18741718..18741742 (25 bp)
GGAGAATACCTTGCGCTAAACTCTT
LOC_Os01g33440
OsAffx.673.1.S1_at--68--5231Chr01:18741721..18741745 (25 bp)
GAATACCTTGCGCTAAACTCTTAGT
LOC_Os01g33440
OsAffx.673.1.S1_at--992--6031Chr01:18742099..18742123 (25 bp)
GAGATCGCGAAGCTCTGAACGCGCT
LOC_Os01g33440
OsAffx.673.1.S1_at--785--4591Chr01:18742105..18742129 (25 bp)
GCGAAGCTCTGAACGCGCTGCTTGA
LOC_Os01g33440
OsAffx.673.1.S1_at--973--3771Chr01:18742111..18742135 (25 bp)
CTCTGAACGCGCTGCTTGAGAAGCT
LOC_Os01g33440
Target Sequence 
CAATTATCAGAAGAGTGAGGTTTATGTGTTGGGGGTTCCAAAGGATGAGGAGGAATTGTATGCTGACATGCTTAATTGTA
AAGTGGGCTCTCTTCCTTTTACTTACTTGGGTTTGCCTATGGGGGTTGGTAAGGAGGTTATGGGTGCCCCTAATTGGGTT
TTGTCCTTTAGAAGAAATCTAGATCAGTCTGACAAGGCTCAATTAGACGTTTTGAAAAGTTTGCTGCAGGATGTGAGGCT
AGATGTTTTGCCTGACAGCTTAATTTGGCCTCATGAGAAGAATAAGAAGTTCACTACTAAATCTATGTATAGGTTGTTAA
AGTTTGGGGGTGTTGTGGACAAAGAGATGAAAGAGATTTGGGGGTGCAAAGTTCCTTTGAAAGTCAAGCATTTCTTGTTT
TTGGCTGGGAGAGGGAGAATACCTTGCGCTAAACTCTTAGTTCAGAGAAATTGGAAGGGAGGGAAGGTGCTGCTGTCAAA
GGAAAGAGATCGCGAAGCTCTGAACGCGCTGCTTGAGAAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.673.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis