Browse Element(s) Details


OsAffx.6774.1.S1_x_at

Description tigr:9638.m02265
TID=OsAffx.6774.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2654011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26510OsAffx.6772.1.S1_at11/1110+13480599..13482092hypothetical protein
LOC_Os10g26510Os.16463.1.S1_at2/1110+13480599..13482092hypothetical protein
LOC_Os10g26520Os.15059.1.S1_at11/1110+13492274..13497972serine/threonine-protein kinase NAK, putative, expressed
LOC_Os10g26520Os.18446.1.S1_at11/1110+13492274..13497972serine/threonine-protein kinase NAK, putative, expressed
LOC_Os10g26530OsAffx.20358.1.S1_at11/1110+13499491..13500190hypothetical protein
LOC_Os10g26540OsAffx.6774.1.S1_x_at11/1110+13501910..13504824expressed protein
LOC_Os10g26540Os.46536.2.S1_at11/1110+13501910..13504824expressed protein
LOC_Os10g26540Os.46536.1.S1_at8/1110+13501910..13504824expressed protein
LOC_Os10g26540Os.46536.2.S1_x_at4/1110+13501910..13504824expressed protein
LOC_Os10g26550NANA10+13509293..13509829hypothetical protein
LOC_Os10g26560OsAffx.20357.1.S1_at11/1110+13511726..13517239expressed protein
LOC_Os10g26570Os.17997.1.S1_at11/1110+13517550..13521947Phosphofructokinase family protein, expressed
LOC_Os10g26570Os.17997.2.S1_x_at11/1110+13517550..13521947Phosphofructokinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6774.1.S1_x_at--640--3971Chr10:13502412..13502436 (25 bp)
CGGTGCCGGACTACTCCATGGACTT
LOC_Os10g26540
OsAffx.6774.1.S1_x_at--654--9191Chr10:13502426..13502450 (25 bp)
TCCATGGACTTCTCCAAGATCCGGG
LOC_Os10g26540
OsAffx.6774.1.S1_x_at--792--3211Chr10:13502440..13502464 (25 bp)
CAAGATCCGGGAGATGCGCAAGCAG
LOC_Os10g26540
OsAffx.6774.1.S1_x_at--481--1291Chr10:13502451..13502475 (25 bp)
AGATGCGCAAGCAGAACAAGCGCGA
LOC_Os10g26540
OsAffx.6774.1.S1_x_at--337--611Chr10:13502453..13502477 (25 bp)
ATGCGCAAGCAGAACAAGCGCGAGC
LOC_Os10g26540
OsAffx.6774.1.S1_x_at--129--4111Chr10:13502456..13502480 (25 bp)
CGCAAGCAGAACAAGCGCGAGCTCT
LOC_Os10g26540
OsAffx.6774.1.S1_x_at--653--1511Chr10:13502460..13502484 (25 bp)
AGCAGAACAAGCGCGAGCTCTCCCG
LOC_Os10g26540
OsAffx.6774.1.S1_x_at--973--3791Chr10:13502614..13502793 (25 bp)
CTCGCCCACGGGTAGAAATTTTGCT
LOC_Os10g26540
OsAffx.6774.1.S1_x_at--1089--9331Chr10:13502615..13502794 (25 bp)
TCGCCCACGGGTAGAAATTTTGCTC
LOC_Os10g26540
OsAffx.6774.1.S1_x_at--782--4091Chr10:13502602..13502795 (25 bp)
CGCCCACGGGTAGAAATTTTGCTCT
LOC_Os10g26540
OsAffx.6774.1.S1_x_at--173--4551Chr10:13502603..13502796 (25 bp)
GCCCACGGGTAGAAATTTTGCTCTA
LOC_Os10g26540
Target Sequence 
CGGTGCCGGACTACTCCATGGACTTCTCCAAGATCCGGGAGATGCGCAAGCAGAACAAGCGCGAGCTCTCCCGCGCCAGC
CTCGGCGGGGACGACGACCTCCTCGCCGCGCAGCAGCACAAGGCCGCCGCGCCGCAGCCCGCCCCCAACGCCTCCGCCGC
CGCCGACGACCACCGCCGGCCGCTCCACGCCGCCCACGACGACTCGCCCACGGGTAGAAATTTTGCTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6774.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis