Browse Element(s) Details


OsAffx.6916.1.S1_at

Description tigr:9638.m03576
TID=OsAffx.6916.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative serine carboxypeptidase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3956011/11Serine carboxypeptidase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39530NANA10+20788585..20792933retrotransposon protein, putative, unclassified
LOC_Os10g39540Os.2657.1.S1_x_at11/1110+20796518..20800129Protein phosphatase 2C containing protein, expressed
LOC_Os10g39550OsAffx.7932.1.S1_x_at10/1110+20804073..20808581myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os10g39554NANA10+20813046..20813290NA
LOC_Os10g39560OsAffx.6916.1.S1_at11/1110+20814007..20817218Serine carboxypeptidase family protein
LOC_Os10g39570OsAffx.30727.1.S1_at8/1110+20824528..20826500expressed protein
LOC_Os10g39590OsAffx.20160.1.S1_x_at11/1110+20833157..20833402Nedd8-like protein RUB3 precursor, putative, expressed
LOC_Os10g39590OsAffx.20160.1.S1_at11/1110+20833157..20833402Nedd8-like protein RUB3 precursor, putative, expressed
LOC_Os10g39600OsAffx.30729.1.S1_at8/1110+20835581..20836950hypothetical protein
LOC_Os10g39610NANA10+20838807..20839543expressed protein
LOC_Os10g39620Os.2935.1.S1_at11/1110+20839650..20844885Ubiquitin family protein, expressed
LOC_Os10g39620OsAffx.18582.1.S1_at11/1110+20839650..20844885Ubiquitin family protein, expressed
LOC_Os10g39620Os.2935.2.S1_x_at11/1110+20839650..20844885Ubiquitin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004185molecular_functionserine carboxypeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6916.1.S1_at--170--3051Chr10:20815343..20815367 (25 bp)
AATCGATCAGTTCAACGCTCTCTAC
LOC_Os10g39560
OsAffx.6916.1.S1_at--62--6331Chr10:20815284..20815308 (25 bp)
GATGCGAGCTCGGATACCCAAACTT
LOC_Os10g39560
OsAffx.6916.1.S1_at--604--10511Chr10:20815261..20815285 (25 bp)
TTCAACTCGTCGTTTGCAGCACAAA
LOC_Os10g39560
OsAffx.6916.1.S1_at--67--1431Chr10:20815007..20815031 (25 bp)
AGAAAGCTCTGCATGCCAATATCCC
LOC_Os10g39560
OsAffx.6916.1.S1_at--758--5451Chr10:20814845..20814869 (25 bp)
GAACGACTCTGACATGACTGTCCTT
LOC_Os10g39560
OsAffx.6916.1.S1_at--650--5711Chr10:20814830..20814854 (25 bp)
GACTGTCCTTCCAATCGTCAAGAAA
LOC_Os10g39560
OsAffx.6916.1.S1_at--137--1431Chr10:20814810..20814834 (25 bp)
AGAAACTCACTCAATCAGGGCTCCG
LOC_Os10g39560
OsAffx.6916.1.S1_at--480--7951Chr10:20814564..20814810 (25 bp)
GGATATGGATTTACAGCGGCGACAC
LOC_Os10g39560
OsAffx.6916.1.S1_at--542--10871Chr10:20814492..20814516 (25 bp)
TTGGCCTGCCCATCAAAGAGGACTG
LOC_Os10g39560
OsAffx.6916.1.S1_at--5--4431Chr10:20814465..20814488 (24 bp)
GCCATGGTTCCATCACAAGCAGGTT
LOC_Os10g39560
OsAffx.6916.1.S1_at--692--7471Chr10:20814119..20814143 (25 bp)
GTGTGGTGTTCGACGGACTGACATT
LOC_Os10g39560
Target Sequence 
AATCGATCAGTTCAACGCTCTCTACAGCATCATAGATATCTACAGCCTTTACACCCCTCGATGCGAGCTCGGATACCCAA
ACTTCAACTCGTCGTTTGCAGCACAAATCGGACGGACCAGCAGCCGTATACCAATGGGCTATGATCCATGCTCGCAAACG
TACGCGACTGAATATTTCAACCGTAAAGATGTTCAGAAAGCTCTGCATGCCAATATCCCTGGAGCATACTCCCTTTGCCA
TAATTCTATCAACCGAGCATGGAACGACTCTGACATGACTGTCCTTCCAATCGTCAAGAAACTCACTCAATCAGGGCTCC
GGATATGGATTTACAGCGGCGACACGGACGCAAGAATCCCTACAACCTCAACCAGGTACACGCTGAAAAAGCTTGGCCTG
CCCATCAAAGAGGACTGGTCGCCATGGTTCCATCACAAGCAGGTTGGTGGGTGGAGTGTGGTGTTCGACGGACTGACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6916.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis