Browse Element(s) Details


OsAffx.6920.1.S1_at

Description tigr:9638.m03622
TID=OsAffx.6920.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3999010/11short-chain dehydrogenase/reductase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39950Os.23246.1.A1_at4/1110+21060140..21069846Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os10g39970Os.51008.1.S1_at11/1110+21077244..21078300Harpin-induced protein 1 containing protein, expressed
LOC_Os10g39980Os.46507.1.S1_at11/1110+21087608..21090146transmembrane protein, putative, expressed
LOC_Os10g39990OsAffx.6920.1.S1_at10/1110+21094679..21095948short-chain dehydrogenase/reductase, putative
LOC_Os10g40000NANA10+21097385..21098658short-chain dehydrogenase/reductase, putative, expressed
LOC_Os10g40010NANA10+21101773..21102135hypothetical protein
LOC_Os10g40020OsAffx.18586.1.S1_at9/1110+21104533..21109608NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os10g40030Os.51462.1.S1_at11/1110+21110581..21113957oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os10g40030Os.19752.2.S1_x_at11/1110+21110581..21113957oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os10g40030Os.19752.1.S1_at5/1110+21110581..21113957oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os10g40040Os.3280.1.S1_at11/1110+21114647..21115801expressed protein
LOC_Os10g40050Os.3277.1.S1_a_at11/1110+21116194..21123894TPR Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6920.1.S1_at--486--6511NONE
GATTTTTACGGATCGATTCAGCGGT
NONE
OsAffx.6920.1.S1_at--1069--6551Chr10:21095344..21095368 (25 bp)
GATTCAGCGGTATTTTTGCTTACCC
LOC_Os10g39990
OsAffx.6920.1.S1_at--50--7871Chr10:21095336..21095360 (25 bp)
GGTATTTTTGCTTACCCTCAGTCCA
LOC_Os10g39990
OsAffx.6920.1.S1_at--538--2711Chr10:21095312..21095336 (25 bp)
AAGCTTGCCAGTATTTTGCACTCCA
LOC_Os10g39990
OsAffx.6920.1.S1_at--294--10211Chr10:21095301..21095325 (25 bp)
TATTTTGCACTCCACTGAGTTGCAA
LOC_Os10g39990
OsAffx.6920.1.S1_at--372--3851Chr10:21095287..21095311 (25 bp)
CTGAGTTGCAATTGGCACGAATTCT
LOC_Os10g39990
OsAffx.6920.1.S1_at--1131--1831Chr10:21094826..21095295 (25 bp)
ACGAATTCTAAAGGGTGCTGCAACG
LOC_Os10g39990
OsAffx.6920.1.S1_at--660--8711Chr10:21094793..21094817 (25 bp)
TGTCGCACTACATCCTCAAGTCAAG
LOC_Os10g39990
OsAffx.6920.1.S1_at--42--4691Chr10:21094761..21094785 (25 bp)
GCGGAAAGTACTTCAGCAATTGCAA
LOC_Os10g39990
OsAffx.6920.1.S1_at--262--5191Chr10:21094746..21094770 (25 bp)
GCAATTGCAATTTAGATAGCCCAAG
LOC_Os10g39990
OsAffx.6920.1.S1_at--169--6491Chr10:21094732..21094756 (25 bp)
GATAGCCCAAGCTCACATGCTTCAA
LOC_Os10g39990
Target Sequence 
GATTTTTACGGATCGATTCAGCGGTATTTTTGCTTACCCTCAGTCCAAGCTTGCCAGTATTTTGCACTCCACTGAGTTGC
AATTGGCACGAATTCTAAAGGGTGCTGCAACGACATGTTATGTCGCACTACATCCTCAAGTCAAGGGGATAAGCGGAAAG
TACTTCAGCAATTGCAATTTAGATAGCCCAAGCTCACATGCTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6920.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis