Browse Element(s) Details


OsAffx.6965.1.S1_at

Description tigr:9639.m00132
TID=OsAffx.6965.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0228011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02230OsAffx.19454.1.S1_at11/1111+625870..627066hypothetical protein
LOC_Os11g02240Os.1310.1.S1_a_at11/1111+629587..632625CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os11g02250OsAffx.19456.1.S1_at11/1111+640564..641001Zinc finger, C3HC4 type family protein
LOC_Os11g02260OsAffx.30781.2.S1_at11/1111+641580..641984Zinc finger, C3HC4 type family protein
LOC_Os11g02260OsAffx.30781.1.S1_s_at11/1111+641580..641984Zinc finger, C3HC4 type family protein
LOC_Os11g02270Os.50557.1.S1_at1/1111+646610..647878expressed protein
LOC_Os11g02280OsAffx.6965.1.S1_at11/1111+648831..649316hypothetical protein
LOC_Os11g02290Os.31991.1.S1_at11/1111+650479..651059expressed protein
LOC_Os11g02290Os.31991.1.S1_s_at11/1111+650479..651059expressed protein
LOC_Os11g02290Os.36558.1.S1_x_at5/1111+650479..651059expressed protein
LOC_Os11g02300Os.28385.1.S1_x_at11/1111+654101..660239mitogen-activated protein kinase, putative, expressed
LOC_Os11g02300Os.28385.2.S1_a_at11/1111+654101..660239mitogen-activated protein kinase, putative, expressed
LOC_Os11g02300Os.28385.3.S1_x_at2/1111+654101..660239mitogen-activated protein kinase, putative, expressed
LOC_Os11g02300OsAffx.25784.1.S1_x_at2/1111+654101..660239mitogen-activated protein kinase, putative, expressed
LOC_Os11g02320Os.21252.1.S1_at11/1111+662978..670704nucleotidyltransferase family protein, putative, expressed
LOC_Os11g02310OsAffx.23315.1.S1_s_at2/1111+670598..672211pentatricopeptide, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6965.1.S1_at--411--11Chr11:649246..649270 (25 bp)
AAATTAACTTTGAGCGTGCGTACGT
LOC_Os11g02280
OsAffx.6965.1.S1_at--665--7291Chr11:649231..649255 (25 bp)
GTGCGTACGTGTCAGACCATGTTAT
LOC_Os11g02280
OsAffx.6965.1.S1_at--504--10151Chr11:649209..649233 (25 bp)
TATCTGCAGCATTATCGGCGGTGGC
LOC_Os11g02280
OsAffx.6965.1.S1_at--1138--2391Chr11:649173..649197 (25 bp)
AAACATCGGCTCTGCAGAGCGGGCA
LOC_Os11g02280
OsAffx.6965.1.S1_at--1159--7451Chr11:649138..649162 (25 bp)
GTGTGAAGCCAATTGGTGACGCAAT
LOC_Os11g02280
OsAffx.6965.1.S1_at--941--7371Chr11:649123..649147 (25 bp)
GTGACGCAATCCTTGTGGAACACGT
LOC_Os11g02280
OsAffx.6965.1.S1_at--633--8651Chr11:649110..649134 (25 bp)
TGTGGAACACGTGCACACATCCCGG
LOC_Os11g02280
OsAffx.6965.1.S1_at--596--4471Chr11:649040..649064 (25 bp)
GCCTGCAGTCTGATGACGCACTCGT
LOC_Os11g02280
OsAffx.6965.1.S1_at--183--9271Chr11:649007..649031 (25 bp)
TCCTCCTTGTCTACTCTATTGGGTA
LOC_Os11g02280
OsAffx.6965.1.S1_at--761--10811Chr11:648989..649013 (25 bp)
TTGGGTACTCGTAGCAACAACTCCT
LOC_Os11g02280
OsAffx.6965.1.S1_at--169--2471Chr11:648974..648998 (25 bp)
AACAACTCCTCGACTGGCGAATTGG
LOC_Os11g02280
Target Sequence 
AAATTAACTTTGAGCGTGCGTACGTGTCAGACCATGTTATCTGCAGCATTATCGGCGGTGGCGGCGGCAGAGAAAACATC
GGCTCTGCAGAGCGGGCAGGTTTTATGGGTGTGAAGCCAATTGGTGACGCAATCCTTGTGGAACACGTGCACACATCCCG
GCAGCAGCTATCATCCTCCTCGCCGCCGGTGTACGACGACGCCGCCGCCTGCAGTCTGATGACGCACTCGTCGTCGTCCT
CCTCCTTGTCTACTCTATTGGGTACTCGTAGCAACAACTCCTCGACTGGCGAATTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6965.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis