Browse Element(s) Details


OsAffx.7002.1.S1_at

Description tigr:9639.m00457
TID=OsAffx.7002.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0542011/11hypothetical protein
LOC_Os04g483601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05390Os.54195.1.S1_at11/1111+2409502..2419050Major Facilitator Superfamily protein, expressed
LOC_Os11g05390Os.21031.1.S1_at10/1111+2409502..2419050Major Facilitator Superfamily protein, expressed
LOC_Os11g05390OsAffx.18687.1.S1_x_at9/1111+2409502..2419050Major Facilitator Superfamily protein, expressed
LOC_Os11g05400Os.5152.1.S1_at11/1111+2419507..2422484Ser/Thr protein phosphatase family protein, expressed
LOC_Os11g05410Os.13516.1.S1_at2/1111+2428893..2432704calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os11g05410OsAffx.9512.1.S1_x_at1/1111+2428893..2432704calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os11g05420OsAffx.7002.1.S1_at11/1111+2433667..2435897hypothetical protein
LOC_Os11g05430OsAffx.18688.1.S1_at8/1111+2438566..2439788hypothetical protein
LOC_Os11g05440OsAffx.7003.1.S1_at11/1111+2441129..2441608expressed protein
LOC_Os11g05450OsAffx.18689.1.S1_at11/1111+2444095..2444523hypothetical protein
LOC_Os11g05460NANA11+2445811..2447095hypothetical protein
LOC_Os11g05470Os.49726.1.S1_at11/1111+2448429..2450007CEN-like protein 2, putative, expressed
LOC_Os11g05480Os.49126.1.S1_at10/1111+2458323..2464637Transcription factor HBP-1b, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7002.1.S1_at--944--8931Chr11:2433705..2433729 (25 bp)
TGACGTTTCCGATACGAAACCTCTC
LOC_Os11g05420
OsAffx.7002.1.S1_at--169--2032Chr11:2433734..2433758 (25 bp)
ACTACTGCTTCTCAGAGGCTTCGGA
LOC_Os11g05420
OsAffx.7002.1.S1_at--345--6011Chr11:2433765..2433789 (25 bp)
GAGAGCTCATTCTGATCGATCGGAT
LOC_Os11g05420
OsAffx.7002.1.S1_at--1142--2411Chr11:2434075..2434099 (25 bp)
AAAAGAGCTGGAGGCAATTGACGAT
LOC_Os11g05420
OsAffx.7002.1.S1_at--441--5771Chr11:2434094..2434118 (25 bp)
GACGATTGTTCTGAAGCCCTAGGCG
LOC_Os11g05420
OsAffx.7002.1.S1_at--22--2671Chr11:2434107..2434131 (25 bp)
AAGCCCTAGGCGACGTGGATTGTGA
LOC_Os11g05420
OsAffx.7002.1.S1_at--184--8971Chr11:2434298..2434322 (25 bp)
TGAAGGGTTGGCACCAAGCCCGAGA
LOC_Os11g05420
OsAffx.7002.1.S1_at--34--2651Chr11:2434323..2434347 (25 bp)
AACCATGGCGAGCACTTGTGCCCAG
LOC_Os11g05420
OsAffx.7002.1.S1_at--617--2071Chr11:2434336..2434360 (25 bp)
ACTTGTGCCCAGTGTACCTGGAGAT
LOC_Os11g05420
OsAffx.7002.1.S1_at--1006--7951Chr11:2434391..2434410 (20 bp)
GGATCAAGACCTTCACAATGAGGAC
LOC_Os11g05420
OsAffx.7002.1.S1_at--195--8991Chr11:2435634..2435658 (25 bp)
TGAACGTTTTGGAGTCATGGTTGAC
LOC_Os11g05420
Target Sequence 
TGACGTTTCCGATACGAAACCTCTCCCTGACTACTGCTTCTCAGAGGCTTCGGAGGTGTGGAGAGCTCATTCTGATCGAT
CGGATGAGGAAAGGGAACAGGAACAGGCTGTTTTGAGGTTCTACGAAGAGAAGGAAAAAGAGCTGGAGGCAATTGACGAT
TGTTCTGAAGCCCTAGGCGACGTGGATTGTGATGATGAGGAGGAGGAGGAAGATGAAGGAACATGTGAGCTATGCATGAA
TGAAGGGTTGGCACCAAGCCCGAGAAACCATGGCGAGCACTTGTGCCCAGTGTACCTGGAGATGGTAAATCAGCAAATTC
TGGAGGAAATAAAGGATCAAGACCTTCACAATGAGGACAACAATATTTTTGAACGTTTTGGAGTCATGGTTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7002.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis