Browse Element(s) Details


OsAffx.7026.1.S1_x_at

Description tigr:9639.m00617
TID=OsAffx.7026.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=probable AUX1-like permease, 10674-8589 (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0682011/11AUX1-like permease; 10674-8589, putative, expressed
LOC_Os10g056904/11AUX1 protein, putative, expressed
LOC_Os05g374702/11AUX1-like permease, putative, expressed
LOC_Os03g140802/11AUX1 protein, putative, expressed
LOC_Os01g637702/11AUX1-like permease, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06790Os.46500.1.S1_at5/1111+3323505..3324213transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g06800Os.46500.2.S1_at7/1111+3326426..3327298hypothetical protein
LOC_Os11g06810Os.10074.1.S1_at11/1111+3328352..3334865expressed protein
LOC_Os11g06810Os.5907.1.A1_at1/1111+3328352..3334865expressed protein
LOC_Os11g06820OsAffx.7026.1.S1_x_at11/1111+3338876..3340595AUX1-like permease; 10674-8589, putative, expressed
LOC_Os11g06820OsAffx.7026.1.S1_at11/1111+3338876..3340595AUX1-like permease; 10674-8589, putative, expressed
LOC_Os11g06830OsAffx.28175.1.S1_s_at11/1111+3348224..3348672hypothetical protein
LOC_Os11g06830OsAffx.28175.1.S1_x_at1/1111+3348224..3348672hypothetical protein
LOC_Os11g06840Os.57118.1.S1_at11/1111+3353344..3355631Zinc finger, C2H2 type family protein, expressed
LOC_Os11g06850OsAffx.7027.1.S1_at11/1111+3359042..3360008hypothetical protein
LOC_Os11g06860Os.24716.1.A1_at9/1111+3363066..3364801expressed protein
LOC_Os11g06870Os.55115.1.S1_at11/1111+3364890..3366775Glyoxal oxidase N-terminus family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0009723biological_processresponse to ethylene stimulus
GO:0009733biological_processresponse to auxin stimulus
GO:0009958biological_processpositive gravitropism
GO:0009928cellular_componentcell surface (sensu Magnoliophyta)
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7026.1.S1_x_at--197--4032Chr11:3339447..3339471 (25 bp)
CGTACGTGCTGACGCTGACGCTGCC
LOC_Os11g06820
OsAffx.7026.1.S1_x_at--968--7631Chr11:3339393..3339417 (25 bp)
GGGACGCGCTGCTGGACCACTCCAA
LOC_Os11g06820
OsAffx.7026.1.S1_x_at--765--5792Chr11:3339334..3339358 (25 bp)
GACGCCGCGGTGGTGCTCATGCTCA
LOC_Os11g06820
OsAffx.7026.1.S1_x_at--796--9093Chr03:7627922..7627946 (25 bp)
TGCTCATGCTCATCCACCAGTTCAT
LOC_Os03g14080
OsAffx.7026.1.S1_x_at--609--4133Chr01:37329389..37329412 (24 bp)
CGCTCTACTTCGTGTGGGAGAAGGC
LOC_Os01g63770
OsAffx.7026.1.S1_x_at--79--9415Chr03:7628126..7628150 (25 bp)
TCGTCAGCTTCACCGTCTACATCAT
LOC_Os03g14080
OsAffx.7026.1.S1_x_at--1047--411Chr11:3339097..3339121 (25 bp)
ATCATCCCGGCGATGGCGCACATGG
LOC_Os11g06820
OsAffx.7026.1.S1_x_at--1099--2531Chr11:3338986..3339010 (25 bp)
AACTGCTTCGTCGTCGCGTGGGTGC
LOC_Os11g06820
OsAffx.7026.1.S1_x_at--648--8651Chr11:3338935..3338959 (25 bp)
TGGGCGAGCACGGTCAACTTCGTTC
LOC_Os11g06820
OsAffx.7026.1.S1_x_at--691--2511Chr11:3338920..3338944 (25 bp)
AACTTCGTTCGCCAAGTTGACACCT
LOC_Os11g06820
OsAffx.7026.1.S1_x_at--944--2811Chr11:3338907..3338931 (25 bp)
AAGTTGACACCTTTGGCCTCTTCAC
LOC_Os11g06820
Target Sequence 
CGTACGTGCTGACGCTGACGCTGCCGTCGGCGGCGGCGATGTACTGGGCGTTCGGGGACGCGCTGCTGGACCACTCCAAC
GCCTTCGCGCTGCTGCCGCGGACGCCGTGGCGCGACGCCGCGGTGGTGCTCATGCTCATCCACCAGTTCATCACCTTCGG
CTTCGCCTGCACGCCGCTCTACTTCGTGTGGGAGAAGGCCATCGGCGTCCACGGCGGCGCCGGCGTGCTCCGCCGCGCGG
CGGCGAGGCTCCCCGTCGTGCTCCCCATCTGGTTCCTCGCCGTCATCTTCCCCTTCTTCGGCCCCATCAACTCCACCGTC
GGATCCTTCCTCGTCAGCTTCACCGTCTACATCATCCCGGCGATGGCGCACATGGCGACGTTCGCGCCGGCGGCCGCCAG
GGAGAACGCCGTCGAGCCGCCGCCGCGCGCGCTCGGCGGCTGGCCGGGGACGTTCGCCGCCAACTGCTTCGTCGTCGCGT
GGGTGCTCGTCGTCGGCTTCGGCTTCGGCGGATGGGCGAGCACGGTCAACTTCGTTCGCCAAGTTGACACCTTTGGCCTC
TTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7026.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis