Browse Element(s) Details


OsAffx.7060.1.S1_s_at

Description tigr:9639.m00974
TID=OsAffx.7060.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1032010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10280Os.2436.1.S1_at4/1111+5575562..5578033D-mannose binding lectin family protein
LOC_Os11g10290Os.2436.1.S1_at10/1111+5581963..5584666D-mannose binding lectin family protein, expressed
LOC_Os11g10300OsAffx.31999.3.S1_at11/1111+5586100..5587921F-box domain containing protein
LOC_Os11g10300Os.54112.1.S1_at1/1111+5586100..5587921F-box domain containing protein
LOC_Os11g10310Os.49827.1.S1_at11/1111+5588030..5598545Leucine Rich Repeat family protein, expressed
LOC_Os11g10320OsAffx.7060.1.S1_s_at10/1111+5600720..5602730expressed protein
LOC_Os11g10320Os.7980.1.S1_at3/1111+5600720..5602730expressed protein
LOC_Os11g10330Os.51951.1.S1_at11/1111+5606764..5610537F-box domain containing protein, expressed
LOC_Os11g10340Os.2431.1.S1_at11/1111+5610910..5613865F-box domain containing protein, expressed
LOC_Os11g10350NANA11+5614657..5615475retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g10360NANA11+5616833..5618131retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g10370OsAffx.7062.1.S1_at11/1111+5623357..5624506F-box domain containing protein
LOC_Os11g10384OsAffx.7063.1.S1_at11/1111+5627299..5635856transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7060.1.S1_s_at--1039--9571Chr11:5600796..5600820 (25 bp)
TCATATTGGCCACTCTCCTTCTCGT
LOC_Os11g10320
OsAffx.7060.1.S1_s_at--1086--7151Chr11:5600819..5600843 (25 bp)
GTCTCCCACGATGTAGCGCATGCAG
LOC_Os11g10320
OsAffx.7060.1.S1_s_at--4--1891Chr11:5600826..5600846 (21 bp)
ACGATGTAGCGCATGCAGCAGAACA
LOC_Os11g10320
OsAffx.7060.1.S1_s_at--402--6971NONE
GTAGCGCATGCAGCAGAACAAGCGG
NONE
OsAffx.7060.1.S1_s_at--807--5851Chr11:5602329..5602353 (25 bp)
GAGCCACAACTTCCAGAGGGGTATG
LOC_Os11g10320
OsAffx.7060.1.S1_s_at--600--10111Chr11:5602350..5602374 (25 bp)
TATGGTTCAGGCTATATGCAACCTG
LOC_Os11g10320
OsAffx.7060.1.S1_s_at--671--911Chr11:5602358..5602382 (25 bp)
AGGCTATATGCAACCTGGGTACCGT
LOC_Os11g10320
OsAffx.7060.1.S1_s_at--100--10031Chr11:5602362..5602386 (25 bp)
TATATGCAACCTGGGTACCGTGGTG
LOC_Os11g10320
OsAffx.7060.1.S1_s_at--859--5151Chr11:5602367..5602391 (25 bp)
GCAACCTGGGTACCGTGGTGCCTAT
LOC_Os11g10320
OsAffx.7060.1.S1_s_at--304--9971Chr11:5602377..5602401 (25 bp)
TACCGTGGTGCCTATACCGGAGGTG
LOC_Os11g10320
OsAffx.7060.1.S1_s_at--97--8611Chr11:5602400..5602424 (25 bp)
TGGTGGCAACGGTCAAAACGGTGGT
LOC_Os11g10320
Target Sequence 
TCATATTGGCCACTCTCCTTCTCGTCTCCCACGATGTAGCGCATGCAGCAGAACAAGCGGGGCCATCGGAGCCACAACTT
CCAGAGGGGTATGGTTCAGGCTATATGCAACCTGGGTACCGTGGTGCCTATACCGGAGGTGGTGGCAACGGTCAAAACGG
TGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7060.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis