Browse Element(s) Details


OsAffx.7063.1.S1_at

Description tigr:9639.m00980
TID=OsAffx.7063.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1038411/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10320OsAffx.7060.1.S1_s_at10/1111+5600720..5602730expressed protein
LOC_Os11g10320Os.7980.1.S1_at3/1111+5600720..5602730expressed protein
LOC_Os11g10330Os.51951.1.S1_at11/1111+5606764..5610537F-box domain containing protein, expressed
LOC_Os11g10340Os.2431.1.S1_at11/1111+5610910..5613865F-box domain containing protein, expressed
LOC_Os11g10350NANA11+5614657..5615475retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g10360NANA11+5616833..5618131retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g10370OsAffx.7062.1.S1_at11/1111+5623357..5624506F-box domain containing protein
LOC_Os11g10384OsAffx.7063.1.S1_at11/1111+5627299..5635856transposon protein, putative, unclassified
LOC_Os11g10400Os.52471.1.S1_at11/1111+5641128..5643884F-box domain containing protein, expressed
LOC_Os11g10410NANA11+5645202..5647405retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g10420OsAffx.7064.1.S1_at11/1111+5648584..5658603Phosphatidylinositol 4-kinase, putative, expressed
LOC_Os11g10420Os.12740.1.S1_x_at11/1111+5648584..5658603Phosphatidylinositol 4-kinase, putative, expressed
LOC_Os11g10420Os.19722.1.S1_at11/1111+5648584..5658603Phosphatidylinositol 4-kinase, putative, expressed
LOC_Os11g10420Os.19722.1.S2_at11/1111+5648584..5658603Phosphatidylinositol 4-kinase, putative, expressed
LOC_Os11g10420Os.19722.1.S1_s_at10/1111+5648584..5658603Phosphatidylinositol 4-kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7063.1.S1_at--307--4511Chr11:5635776..5635800 (25 bp)
GCCGATCGACGAGTGCAGGTTCAGT
LOC_Os11g10384
OsAffx.7063.1.S1_at--571--1091Chr11:5635643..5635667 (25 bp)
AGTGGCGTCCAACTAGCGCTGGATA
LOC_Os11g10384
OsAffx.7063.1.S1_at--1046--9991Chr11:5635630..5635654 (25 bp)
TAGCGCTGGATAACCTGGCCATCGT
LOC_Os11g10384
OsAffx.7063.1.S1_at--878--4231Chr11:5635602..5635626 (25 bp)
CCGGCATTTGGAGAAGCTACAGCTT
LOC_Os11g10384
OsAffx.7063.1.S1_at--396--5931Chr11:5635523..5635547 (25 bp)
GAGCATCTTGATATATCCTTCTGTA
LOC_Os11g10384
OsAffx.7063.1.S1_at--870--251Chr11:5635511..5635535 (25 bp)
ATATCCTTCTGTAACCTGGTTGATG
LOC_Os11g10384
OsAffx.7063.1.S1_at--859--6352Chr11:5635490..5635514 (25 bp)
GATGCCAAGAAGATCTCTTCCCGAT
LOC_Os11g10384
OsAffx.7063.1.S1_at--344--4051Chr11:5635469..5635493 (25 bp)
CGATCCTTGAAACACCTCAACATCT
LOC_Os11g10384
OsAffx.7063.1.S1_at--555--431Chr11:5635448..5635472 (25 bp)
ATCTTCCGTTGCATTTTCAGCCGTA
LOC_Os11g10384
OsAffx.7063.1.S1_at--641--1651Chr11:5635430..5635454 (25 bp)
AGCCGTACTTTCCACACTCATATTT
LOC_Os11g10384
OsAffx.7063.1.S1_at--338--2011Chr11:5635415..5635439 (25 bp)
ACTCATATTTGTGCACCGAATCTCC
LOC_Os11g10384
Target Sequence 
GCCGATCGACGAGTGCAGGTTCAGTTTGGGCGGGCTGTCCGACTTCGCCGCCGACGCCCGCCGCGTGGACCGCTGGTTCC
GCCATGCCGCGGTGATGTGCCAGGCCCGTGTGCTGCAGCTGCGACTCGCTCCCAGTGGCGTCCAACTAGCGCTGGATAAC
CTGGCCATCGTCTCCCGGCATTTGGAGAAGCTACAGCTTACTGGTGTGAAGCTGATGCACAGTTTCCTTGATTTCTCGAG
CTGTCCGGTGCTGGAGCATCTTGATATATCCTTCTGTAACCTGGTTGATGCCAAGAAGATCTCTTCCCGATCCTTGAAAC
ACCTCAACATCTTCCGTTGCATTTTCAGCCGTACTTTCCACACTCATATTTGTGCACCGAATCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7063.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis