Browse Element(s) Details


OsAffx.7107.1.S1_at

Description tigr:9639.m01315
TID=OsAffx.7107.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc knuckle, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1436011/11Zinc knuckle family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14330OsAffx.31892.2.S1_x_at1/1111+8034361..8041580retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14340Os.10731.1.A1_a_at11/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340Os.48015.1.A1_at5/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340OsAffx.3613.1.S1_x_at3/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340Os.48015.1.A1_x_at3/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340OsAffx.31869.5.S1_x_at3/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340OsAffx.3613.1.S1_at2/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340OsAffx.27522.1.S1_x_at2/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340OsAffx.20509.1.S1_at2/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14350Os.14491.2.S1_x_at3/1111+8052533..8055913transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14350Os.47463.1.S1_x_at1/1111+8052533..8055913transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14350OsAffx.20057.1.S1_at1/1111+8052533..8055913transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14360OsAffx.7107.1.S1_at11/1111+8058529..8060562Zinc knuckle family protein
LOC_Os11g14370OsAffx.20973.1.S1_at1/1111+8064348..8066349hypothetical protein
LOC_Os11g14380Os.48915.1.S1_at10/1111+8067905..8073534NB-ARC domain containing protein, expressed
LOC_Os11g14380Os.55130.1.S1_at1/1111+8067905..8073534NB-ARC domain containing protein, expressed
LOC_Os11g14390Os.51056.1.S1_at11/1111+8078330..8080286expressed protein
LOC_Os11g14400OsAffx.18846.1.S1_at11/1111+8080444..8081983Polygalacturonase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7107.1.S1_at--771--5871Chr11:8058683..8058707 (25 bp)
GAGCGAATAATGACTCCAGACCCAT
LOC_Os11g14360
OsAffx.7107.1.S1_at--112--4331Chr11:8058704..8058728 (25 bp)
CCATCAACGTGGCATGCACACTGTT
LOC_Os11g14360
OsAffx.7107.1.S1_at--749--5111Chr11:8058719..8058743 (25 bp)
GCACACTGTTGATATCTCTTAACGA
LOC_Os11g14360
OsAffx.7107.1.S1_at--712--6331Chr11:8060241..8060265 (25 bp)
GATGCTAGCCGCAAAGTTGGACCTC
LOC_Os11g14360
OsAffx.7107.1.S1_at--482--1691Chr11:8060296..8060320 (25 bp)
AGCCAGCCTCAAGGAACCGTGAAGG
LOC_Os11g14360
OsAffx.7107.1.S1_at--1010--2931Chr11:8060317..8060341 (25 bp)
AAGGCATTGGATTCGCACATCTCGT
LOC_Os11g14360
OsAffx.7107.1.S1_at--850--2091Chr11:8060333..8060357 (25 bp)
ACATCTCGTGCAAGGTCTGCGGGAA
LOC_Os11g14360
OsAffx.7107.1.S1_at--1125--2891Chr11:8060344..8060368 (25 bp)
AAGGTCTGCGGGAACATGGGCCACT
LOC_Os11g14360
OsAffx.7107.1.S1_at--695--8631Chr11:8060360..8060384 (25 bp)
TGGGCCACTCGGGAAATGACTGTCT
LOC_Os11g14360
OsAffx.7107.1.S1_at--264--671Chr11:8060375..8060399 (25 bp)
ATGACTGTCTCGAGACCCGTGAGGA
LOC_Os11g14360
OsAffx.7107.1.S1_at--237--6511Chr11:8060432..8060456 (25 bp)
GATATCGTCCGCACAAAGGCCAAGG
LOC_Os11g14360
Target Sequence 
GAGCGAATAATGACTCCAGACCCATCAACGTGGCATGCACACTGTTGATATCTCTTAACGACATTACTAGAAATATAATT
CCTAGCAATGGAGCCAGAAATATTCATGACACCATCAAGGAAACAGAGATGCTAGCCGCAAAGTTGGACCTCCTGATGAA
AATGTTGGACAATCAGGACAAAAGCCAGCCTCAAGGAACCGTGAAGGCATTGGATTCGCACATCTCGTGCAAGGTCTGCG
GGAACATGGGCCACTCGGGAAATGACTGTCTCGAGACCCGTGAGGAGGCCATGTTCATGGGGAACAACAACAACAATGGA
TATCGTCCGCACAAAGGCCAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7107.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis