Browse Element(s) Details


Os.48915.1.S1_at

Description gb:AK101707.1
DB_XREF= gi:32986916
TID=Os.48915.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48915 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033060J18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033060J18, full insert sequence.
FL= gb:AK101707.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1438010/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14340Os.10731.1.A1_a_at11/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340Os.48015.1.A1_at5/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340OsAffx.3613.1.S1_x_at3/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340Os.48015.1.A1_x_at3/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340OsAffx.31869.5.S1_x_at3/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340OsAffx.3613.1.S1_at2/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340OsAffx.27522.1.S1_x_at2/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340OsAffx.20509.1.S1_at2/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14350Os.14491.2.S1_x_at3/1111+8052533..8055913transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14350Os.47463.1.S1_x_at1/1111+8052533..8055913transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14350OsAffx.20057.1.S1_at1/1111+8052533..8055913transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14360OsAffx.7107.1.S1_at11/1111+8058529..8060562Zinc knuckle family protein
LOC_Os11g14370OsAffx.20973.1.S1_at1/1111+8064348..8066349hypothetical protein
LOC_Os11g14380Os.48915.1.S1_at10/1111+8067905..8073534NB-ARC domain containing protein, expressed
LOC_Os11g14380Os.55130.1.S1_at1/1111+8067905..8073534NB-ARC domain containing protein, expressed
LOC_Os11g14390Os.51056.1.S1_at11/1111+8078330..8080286expressed protein
LOC_Os11g14400OsAffx.18846.1.S1_at11/1111+8080444..8081983Polygalacturonase family protein, expressed
LOC_Os11g14410Os.56125.1.S1_at11/1111+8085613..8087684Polygalacturonase precursor, putative, expressed
LOC_Os11g14420Os.22882.1.S1_at9/1111+8091330..8095052Protein kinase domain containing protein, expressed
LOC_Os11g14430Os.8330.2.S1_a_at11/1111+8096199..8100783RNA recognition motif family protein, expressed
LOC_Os11g14430Os.8330.1.S1_x_at11/1111+8096199..8100783RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48915.1.S1_at--435--10731Chr11:8072991..8073015 (25 bp)
TTGCTAGGACATATGCCTGCTCTGT
LOC_Os11g14380
Os.48915.1.S1_at--831--9091Chr11:8073008..8073032 (25 bp)
TGCTCTGTCATCTCTGACCATATAC
LOC_Os11g14380
Os.48915.1.S1_at--91--311Chr11:8073029..8073053 (25 bp)
ATACTCAAATACTGCCCTTCAAGGG
LOC_Os11g14380
Os.48915.1.S1_at--218--7931Chr11:8073069..8073093 (25 bp)
GGATTCCATTCTACCAAGTTTTTCA
LOC_Os11g14380
Os.48915.1.S1_at--350--1231Chr11:8073094..8073118 (25 bp)
AGTTCTATTGCAATCCTGCAGGGTT
LOC_Os11g14380
Os.48915.1.S1_at--910--4651Chr11:8073111..8073135 (25 bp)
GCAGGGTTAACCTTTGACGCAGGAA
LOC_Os11g14380
Os.48915.1.S1_at--378--5011Chr11:8073129..8073153 (25 bp)
GCAGGAAGTCTGTTAAAGCTCGAAT
LOC_Os11g14380
Os.48915.1.S1_at--694--2691Chr11:8073144..8073168 (25 bp)
AAGCTCGAATGCCTTGATGTCATAA
LOC_Os11g14380
Os.48915.1.S1_at--244--791Chr11:8073172..8073196 (25 bp)
ATGTGTTCAACACGAAGTCTTCAAA
LOC_Os11g14380
Os.48915.1.S1_at--526--2391Chr11:8073324..8073348 (25 bp)
AAACTTCCAGGACAGCCTAAGCTGA
LOC_Os11g14380
Os.48915.1.S1_at--6--1111Chr11:8073512..8073536 (25 bp)
AGTCTAACAATTCTTTACCCATCAA
NONE
Target Sequence 
TTGCTAGGACATATGCCTGCTCTGTCATCTCTGACCATATACTCAAATACTGCCCTTCAAGGGAGGATCATCATCAGTGG
ATTCCATTCTACCAAGTTTTTCAAGTTCTATTGCAATCCTGCAGGGTTAACCTTTGACGCAGGAAGTCTGTTAAAGCTCG
AATGCCTTGATGTCATAATGAATGTGTTCAACACGAAGTCTTCAAATGGTAGCTTTGATTTTGGCATTCAATATCTTACC
AACCTTAGAAATGTCTACATTCAACTTGATTGTAATGGGTCGACTGGTGGAGAATTGGAAGCAGCTAAAGCTTCCATCAA
GAGCTCAGTAAACAAACTTCCAGGACAGCCTAAGCTGAACTTGAGCACATTGAATGAAAATATGTTAGTCCATGAAGAAG
CTAATTAATTAAATGGAAGGGGACGTAAATTTCGAGTACGAACATTGCAGGTATCAATTTCGGTTTTGATTTTTTTTTTT
TTGCAGAAAGGACCAGTACCAAAAATACCATTTGTAATTTATAGTCTAACAATTCTTTACCCATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48915.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis