Browse Element(s) Details


Os.56125.1.S1_at

Description gb:AK109298.1
DB_XREF= gi:32994507
TID=Os.56125.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56125 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-188-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-188-D07, full insert sequence.
FL= gb:AK109298.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1441011/11Polygalacturonase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14370OsAffx.20973.1.S1_at1/1111+8064348..8066349hypothetical protein
LOC_Os11g14380Os.48915.1.S1_at10/1111+8067905..8073534NB-ARC domain containing protein, expressed
LOC_Os11g14380Os.55130.1.S1_at1/1111+8067905..8073534NB-ARC domain containing protein, expressed
LOC_Os11g14390Os.51056.1.S1_at11/1111+8078330..8080286expressed protein
LOC_Os11g14400OsAffx.18846.1.S1_at11/1111+8080444..8081983Polygalacturonase family protein, expressed
LOC_Os11g14410Os.56125.1.S1_at11/1111+8085613..8087684Polygalacturonase precursor, putative, expressed
LOC_Os11g14420Os.22882.1.S1_at9/1111+8091330..8095052Protein kinase domain containing protein, expressed
LOC_Os11g14430Os.8330.2.S1_a_at11/1111+8096199..8100783RNA recognition motif family protein, expressed
LOC_Os11g14430Os.8330.1.S1_x_at11/1111+8096199..8100783RNA recognition motif family protein, expressed
LOC_Os11g14440Os.50133.1.S1_at11/1111+8101334..8102798expressed protein
LOC_Os11g14450OsAffx.31069.1.S1_at2/1111+8107495..8109635retrotransposon protein, putative, unclassified
LOC_Os11g14450OsAffx.31069.1.S1_x_at2/1111+8107495..8109635retrotransposon protein, putative, unclassified
LOC_Os11g14460OsAffx.20387.1.S1_x_at1/1111+8110412..8118596retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004650molecular_functionpolygalacturonase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56125.1.S1_at--822--7651Chr11:8086073..8086097 (25 bp)
GGGATCAGGCTCAGGAACATCAACC
LOC_Os11g14410
Os.56125.1.S1_at--955--2491Chr11:8086058..8086082 (25 bp)
AACATCAACCTGACGTACGACGGCG
LOC_Os11g14410
Os.56125.1.S1_at--891--5151Chr11:8086027..8086051 (25 bp)
GCAAGCCGGCGAGGTCCTTCTGCAA
LOC_Os11g14410
Os.56125.1.S1_at--1039--2671Chr11:8085905..8085929 (25 bp)
AAGCGTACAATGGTTGCATCTACAT
LOC_Os11g14410
Os.56125.1.S1_at--212--3071Chr11:8085875..8085899 (25 bp)
AATCTTGGTGATTTGCGACGGAAAA
LOC_Os11g14410
Os.56125.1.S1_at--80--1691Chr11:8085846..8085870 (25 bp)
AGCCATATTGGTTGGTGTATCCGGA
LOC_Os11g14410
Os.56125.1.S1_at--905--7411Chr11:8085832..8085856 (25 bp)
GTGTATCCGGAAGCTACGACGGCCG
LOC_Os11g14410
Os.56125.1.S1_at--341--9811Chr11:8085792..8085816 (25 bp)
TAACGGGCGGATTAAGCCACTCTCT
LOC_Os11g14410
Os.56125.1.S1_at--831--2651Chr11:8085779..8085803 (25 bp)
AAGCCACTCTCTTGGATTTTTGCAA
LOC_Os11g14410
Os.56125.1.S1_at--411--4391Chr11:8085693..8085717 (25 bp)
GCCACGTAGGCTTTCTAGTTCTTGA
LOC_Os11g14410
Os.56125.1.S1_at--145--7631Chr11:8085630..8085654 (25 bp)
GGGAAACCAGTTGCATGTTATCAAA
LOC_Os11g14410
Target Sequence 
GGGATCAGGCTCAGGAACATCAACCTGACGTACGACGGCGGCGGCGGCAAGCCGGCGAGGTCCTTCTGCAAGAACGCCGG
CGGGTCGGCGTCCGGCGTGGTCATCCCACCGAGCTGCCTCTGACCGGCGACCGCACGGCACGGCACGACGCCGCCGACGT
ACGGCAGCAAGCGTACAATGGTTGCATCTACATGTGAAAATCTTGGTGATTTGCGACGGAAAAAGCAAGCCATATTGGTT
GGTGTATCCGGAAGCTACGACGGCCGGCCCTAGTAACGGACTAACGGGCGGATTAAGCCACTCTCTTGGATTTTTGCAAA
GAAAGCTAAAGTATGCTCAAAATATTCCAAATTATTAATATAAAAACAGAGTATTACGTAGCCACGTAGGCTTTCTAGTT
CTTGAAATTTCTTTTTTTGCCAAATGTGAAGGATTACCCAACGGGGAAACCAGTTGCATGTTATCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56125.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis