Browse Element(s) Details


Os.22882.1.S1_at

Description gb:AK073005.1
DB_XREF= gi:32983028
TID=Os.22882.1
CNT=17
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.22882 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023150L22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023150L22, full insert sequence.
FL= gb:AK060377.1 gb:AK073005.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g144209/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14370OsAffx.20973.1.S1_at1/1111+8064348..8066349hypothetical protein
LOC_Os11g14380Os.48915.1.S1_at10/1111+8067905..8073534NB-ARC domain containing protein, expressed
LOC_Os11g14380Os.55130.1.S1_at1/1111+8067905..8073534NB-ARC domain containing protein, expressed
LOC_Os11g14390Os.51056.1.S1_at11/1111+8078330..8080286expressed protein
LOC_Os11g14400OsAffx.18846.1.S1_at11/1111+8080444..8081983Polygalacturonase family protein, expressed
LOC_Os11g14410Os.56125.1.S1_at11/1111+8085613..8087684Polygalacturonase precursor, putative, expressed
LOC_Os11g14420Os.22882.1.S1_at9/1111+8091330..8095052Protein kinase domain containing protein, expressed
LOC_Os11g14430Os.8330.2.S1_a_at11/1111+8096199..8100783RNA recognition motif family protein, expressed
LOC_Os11g14430Os.8330.1.S1_x_at11/1111+8096199..8100783RNA recognition motif family protein, expressed
LOC_Os11g14440Os.50133.1.S1_at11/1111+8101334..8102798expressed protein
LOC_Os11g14450OsAffx.31069.1.S1_at2/1111+8107495..8109635retrotransposon protein, putative, unclassified
LOC_Os11g14450OsAffx.31069.1.S1_x_at2/1111+8107495..8109635retrotransposon protein, putative, unclassified
LOC_Os11g14460OsAffx.20387.1.S1_x_at1/1111+8110412..8118596retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22882.1.S1_at--137--10771Chr11:8094421..8094445 (25 bp)
TTGAGGTTTACCAGCTAATGAGAGC
LOC_Os11g14420
Os.22882.1.S1_at--1022--3091Chr11:8094457..8094481 (25 bp)
AATACCATTTTAGCGCTGCAGACGA
LOC_Os11g14420
Os.22882.1.S1_at--1055--6311Chr11:8094480..8094504 (25 bp)
GATGAATTGACGATGCAGCCGCAGA
LOC_Os11g14420
Os.22882.1.S1_at--923--6671Chr11:8094568..8094592 (25 bp)
GTTGCTCAGATGCAGTAGCTACTGT
LOC_Os11g14420
Os.22882.1.S1_at--475--3211Chr11:8094698..8094722 (25 bp)
CAAGATATGCATGCCATTTGGTTTG
LOC_Os11g14420
Os.22882.1.S1_at--843--2391Chr11:8094750..8094774 (25 bp)
AAACTTTTTCTGTACATTCTTGCCT
LOC_Os11g14420
Os.22882.1.S1_at--249--10691Chr11:8094769..8094793 (25 bp)
TTGCCTTGCTGTGTACTATCTCTAG
LOC_Os11g14420
Os.22882.1.S1_at--1103--451Chr11:8094786..8094810 (25 bp)
ATCTCTAGGATTGGCATGTCCTGCT
LOC_Os11g14420
Os.22882.1.S1_at--525--7011Chr11:8094884..8094908 (25 bp)
GTACTACTGGGTTGTTGATCCTCCA
LOC_Os11g14420
Os.22882.1.S1_at--686--10611NONE
TTCGGTGCGTTCTTTTGTCATTTTT
NONE
Os.22882.1.S1_at--1154--10491NONE
TTAATGTGGAGTGAGCCCCAGGTAT
NONE
Target Sequence 
TTGAGGTTTACCAGCTAATGAGAGCTATTGGAGAGAAATACCATTTTAGCGCTGCAGACGATGAATTGACGATGCAGCCG
CAGAATGCTGAAGCCGAAAAGCTTGATGAGCTTATTGTAGCAAACTAGANGAGGGTGATGAATGGATGTTGCTCAGATGC
AGTAGCTACTGTGAAGCTTCTAGATAATCAGGGTGATCNGAACTGAATGGAATCCTGCTCAGTNTATTTTTTTCCAGCAA
TTGCACTNCTGAGCAACACTAGGTAAAGCTGTAAGCTCCAAGATATGCATGCCATTTGGTTTGTAAGATCTGTATCAATT
AGCCATGTTAAAACTTTTTCTGTACATTCTTGCCTTGCTGTGTACTATCTCTAGGATTGGCATGTCCTGCTGTTGTAAGA
TGGATCAACTGTNTCAGCATCCGAATTTAGTTGTAGTAGCTCNTAGATTTAGCAATGTTGAACAGTACTACTGGGTTGTT
GATCCTCCACATTTTTTTCGGTGCGTTCTTTTGTCATTTTTGTTAGTTAATGTGGAGTGAGCCCCAGGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22882.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis