Browse Element(s) Details


OsAffx.20973.1.S1_at

Description gb:XM_354136.1
DB_XREF= gi:35189705
GEN=OJ1080_F08.21
TID=OsAffx.20973.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g143701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14330OsAffx.31892.2.S1_x_at1/1111+8034361..8041580retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14340Os.10731.1.A1_a_at11/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340Os.48015.1.A1_at5/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340OsAffx.3613.1.S1_x_at3/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340Os.48015.1.A1_x_at3/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340OsAffx.31869.5.S1_x_at3/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340OsAffx.3613.1.S1_at2/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340OsAffx.27522.1.S1_x_at2/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340OsAffx.20509.1.S1_at2/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14350Os.14491.2.S1_x_at3/1111+8052533..8055913transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14350Os.47463.1.S1_x_at1/1111+8052533..8055913transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14350OsAffx.20057.1.S1_at1/1111+8052533..8055913transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14360OsAffx.7107.1.S1_at11/1111+8058529..8060562Zinc knuckle family protein
LOC_Os11g14370OsAffx.20973.1.S1_at1/1111+8064348..8066349hypothetical protein
LOC_Os11g14380Os.48915.1.S1_at10/1111+8067905..8073534NB-ARC domain containing protein, expressed
LOC_Os11g14380Os.55130.1.S1_at1/1111+8067905..8073534NB-ARC domain containing protein, expressed
LOC_Os11g14390Os.51056.1.S1_at11/1111+8078330..8080286expressed protein
LOC_Os11g14400OsAffx.18846.1.S1_at11/1111+8080444..8081983Polygalacturonase family protein, expressed
LOC_Os11g14410Os.56125.1.S1_at11/1111+8085613..8087684Polygalacturonase precursor, putative, expressed
LOC_Os11g14420Os.22882.1.S1_at9/1111+8091330..8095052Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20973.1.S1_at--63--6039Chr11:16503086..16503109 (24 bp)
GAGAGTGAAGTCCTTTTATAGCCTT
NONE
OsAffx.20973.1.S1_at--791--5311Chr07:6482012..6482036 (25 bp)
GAAGTCCTTTTATAGCCTTTCAATG
NONE
OsAffx.20973.1.S1_at--305--311Chr07:6482023..6482047 (25 bp)
ATAGCCTTTCAATGATGGTTGAGAT
NONE
OsAffx.20973.1.S1_at--1050--3191Chr07:6482032..6482056 (25 bp)
CAATGATGGTTGAGATGGTTAGAAT
NONE
OsAffx.20973.1.S1_at--252--10011Chr07:6482051..6482075 (25 bp)
TAGAATGGTCGGAAATTCCCTCCAA
NONE
OsAffx.20973.1.S1_at--784--7651Chr07:6482085..6482109 (25 bp)
GGGAGTGATCCAAGCCGTACAGAAG
NONE
OsAffx.20973.1.S1_at--374--7391Chr07:6482089..6482113 (25 bp)
GTGATCCAAGCCGTACAGAAGAAGG
NONE
OsAffx.20973.1.S1_at--980--5371Chr07:6482106..6482130 (25 bp)
GAAGAAGGCTTGTATCCAACGGCGC
NONE
OsAffx.20973.1.S1_at--733--8291Chr07:6482112..6482136 (25 bp)
GGCTTGTATCCAACGGCGCCAGGGA
NONE
OsAffx.20973.1.S1_at--169--4511Chr07:6482144..6482168 (25 bp)
GCCGAACCGTGGGATGGGCCTTCCT
NONE
OsAffx.20973.1.S1_at--1013--8632Chr11:8065402..8065421 (20 bp)
TGGGATGGGCCTTCCTGGCCCATTT
LOC_Os11g14370
Target Sequence 
GAGAGTGAAGTCCTTTTATAGCCTTTCAATGATGGTTGAGATGGTTAGAATGGTCGGAAATTCCCTCCAAACACCATTGG
GGAGTGATCCAAGCCGTACAGAAGAAGGCTTGTATCCAACGGCGCCAGGGAGGGTTCGGCCGAACCGTGGGATGGGCCTT
CCTGGCCCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20973.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis