Browse Element(s) Details


Os.8330.2.S1_a_at

Description gb:CB629932
DB_XREF= gi:29624921
DB_XREF=OSIIEb06I19.r
CLONE=OSIIEb06I19
TID=Os.8330.2
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.8330 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_567192.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1443011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14380Os.48915.1.S1_at10/1111+8067905..8073534NB-ARC domain containing protein, expressed
LOC_Os11g14380Os.55130.1.S1_at1/1111+8067905..8073534NB-ARC domain containing protein, expressed
LOC_Os11g14390Os.51056.1.S1_at11/1111+8078330..8080286expressed protein
LOC_Os11g14400OsAffx.18846.1.S1_at11/1111+8080444..8081983Polygalacturonase family protein, expressed
LOC_Os11g14410Os.56125.1.S1_at11/1111+8085613..8087684Polygalacturonase precursor, putative, expressed
LOC_Os11g14420Os.22882.1.S1_at9/1111+8091330..8095052Protein kinase domain containing protein, expressed
LOC_Os11g14430Os.8330.2.S1_a_at11/1111+8096199..8100783RNA recognition motif family protein, expressed
LOC_Os11g14430Os.8330.1.S1_x_at11/1111+8096199..8100783RNA recognition motif family protein, expressed
LOC_Os11g14440Os.50133.1.S1_at11/1111+8101334..8102798expressed protein
LOC_Os11g14450OsAffx.31069.1.S1_at2/1111+8107495..8109635retrotransposon protein, putative, unclassified
LOC_Os11g14450OsAffx.31069.1.S1_x_at2/1111+8107495..8109635retrotransposon protein, putative, unclassified
LOC_Os11g14460OsAffx.20387.1.S1_x_at1/1111+8110412..8118596retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os11g14470NANA11+8125514..8126172hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8330.2.S1_a_at--44--11Chr11:8096942..8096966 (25 bp)
ACCTTTGGGTGACAAGAAACCTGAT
LOC_Os11g14430
Os.8330.2.S1_a_at--551--10251Chr11:8096939..8096963 (25 bp)
TTTGGGTGACAAGAAACCTGATCAC
LOC_Os11g14430
Os.8330.2.S1_a_at--20--8571Chr11:8096741..8096846 (25 bp)
TGGATTCAACCAGCCTATGATCTAT
LOC_Os11g14430
Os.8330.2.S1_a_at--87--6571Chr11:8096739..8096844 (25 bp)
GATTCAACCAGCCTATGATCTATGG
LOC_Os11g14430
Os.8330.2.S1_a_at--993--1711Chr11:8096733..8096755 (23 bp)
ACCAGCCTATGATCTATGGTAGAGG
LOC_Os11g14430
Os.8330.2.S1_a_at--2--10591Chr11:8096565..8096585 (21 bp)
TTCTGCAACAGCCTGGTGGAATTCC
LOC_Os11g14430
Os.8330.2.S1_a_at--861--9471Chr11:8096564..8096585 (22 bp)
TCTGCAACAGCCTGGTGGAATTCCC
LOC_Os11g14430
Os.8330.2.S1_a_at--944--8691Chr11:8096424..8096448 (25 bp)
TGTGCCGCCAGCCATCATGCAGTGT
LOC_Os11g14430
Os.8330.2.S1_a_at--618--4531Chr11:8096421..8096445 (25 bp)
GCCGCCAGCCATCATGCAGTGTGAT
LOC_Os11g14430
Os.8330.2.S1_a_at--198--3531Chr11:8096409..8096433 (25 bp)
CATGCAGTGTGATGGATTTGTTAAC
LOC_Os11g14430
Os.8330.2.S1_a_at--474--7392Chr11:8096401..8096425 (25 bp)
GTGATGGATTTGTTAACTTATGAAA
LOC_Os11g14430
Target Sequence 
ACCTTTGGGTGACAAGAAACCTGATCACTCGTTCAAGCCANCAGGAGCTCCAAATTTTCCACTTCCTCCTTATGGTGCCT
ACATGGGAGATCCATATGGTGCTTATGGTGNTGGTGGTCCTGGATTCAACCAGCCTATGATCTATGGTAGAGGACCANGC
ACCAGCTGGTATGAGGATGGTCCCAATGGTGCTCCCTGACGGTCGTCTTGGATATGTTCTGCAACAGCCTGGTGGAATTC
CCCCTCCACCTCCAATGCGACNCGGTGACCGGAGGGATGGTGGCAGCCGAGGTGGTGAAGGGAGTCATGGCCGGCGATAT
CGCCCTTACTAGTTTTTCTTTTTTTTCCATTCCCTTGTGCCGCCAGCCATCATGCAGTGTGATGGATTTGTTAACTTATG
AAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8330.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis